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plant:cassava [2020/06/14 12:09] – [Resistance gene: candidate genes interacting with TAL14 Xam668] mamore | plant:cassava [2024/12/16 15:17] (current) – [Plant Resistance Genes in Cassava (//Manihot esculenta// Crantz) against //Xanthomonas// Infection] rkoebnik | ||
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- | ====== Cassava (//Manihot esculenta// | + | ====== |
- | Author: Roland Kölliker\\ | + | Author: |
- | Internal reviewer: Massimiliano Morelli\\ | + | Internal reviewer: |
- | Expert reviewer: FIXME | + | |
- | ===== Pathogen: // | + | ===== Pathogen: // |
==== Resistance gene: // | ==== Resistance gene: // | ||
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=== Synonyms === | === Synonyms === | ||
- | cassava4.1_013474 (Sui et al., 2017). | + | cassava4.1_013474 (Sui //et al.//, 2017). |
=== Source === | === Source === | ||
- | Cassava cultivar TMS 60444 (Cohn et al., 2014; Cohn et al., 2016). | + | Cassava cultivar TMS 60444 (Cohn //et al.//, 2014; Cohn //et al.//, 2016). |
=== Status (identified, | === Status (identified, | ||
- | Sequenced. | + | Sequenced |
=== Molecular markers === | === Molecular markers === | ||
- | //NA//. | + | //NA// |
=== Brief description === | === Brief description === | ||
- | Interacts with Tal20< | + | Interacts with Tal20< |
---- | ---- | ||
- | ==== Resistance gene: candidate genes interacting with TAL14 | + | ==== Resistance gene: candidate genes interacting with TAL14 Xam668 ==== |
=== Synonyms === | === Synonyms === | ||
- | //NA//. | + | //NA// |
=== Source === | === Source === | ||
- | Cassava cultivar TMS 60444 (Cohn et al., 2016). | + | Cassava cultivar TMS 60444 (Cohn //et al.//, 2016). |
=== Status (identified, | === Status (identified, | ||
- | Identified (Cohn et al., 2016). | + | Identified (Cohn //et al.//, 2016). |
=== Molecular markers === | === Molecular markers === | ||
- | //NA//. | + | //NA// |
=== Brief description === | === Brief description === | ||
- | RNA sequencing was used to identify the full target repertoire of TAL14< | + | RNA sequencing was used to identify the full target repertoire of TAL14< |
---- | ---- | ||
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=== Synonyms === | === Synonyms === | ||
- | PCR250; Xa21-like resistance gene. | + | PCR250; Xa21-like resistance gene (Diaz-Tatis //et al.//, 2018). |
=== Source === | === Source === | ||
- | Cassava cultivars | + | Cassava cultivars |
=== Status (identified, | === Status (identified, | ||
- | Sequenced. | + | Sequenced |
=== Molecular markers === | === Molecular markers === | ||
- | PCR250. | + | PCR250 |
=== Brief description === | === Brief description === | ||
- | Overexpression of //RXam1// leads to a reduction in bacterial growth of //Xam//CIO136. This suggests that //RXam1// might be implicated in strain-specific resistance to //Xam//CIO136 (Diaz-Tatis //et al//., 2018). | + | Overexpression of //RXam1// leads to a reduction in bacterial growth of //Xpm// CIO136. This suggests that //RXam1// might be implicated in strain-specific resistance to //Xpm// CIO136 (Diaz-Tatis //et al.//, 2018). |
---- | ---- | ||
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=== Synonyms === | === Synonyms === | ||
- | //NA//. | ||
+ | //NA// | ||
=== Source === | === Source === | ||
- | Pepper. | ||
+ | Pepper (Tai //et al.//, 1999; Diaz-Tatis //et al.//, 2019). | ||
=== Status (identified, | === Status (identified, | ||
- | Sequenced. | ||
+ | Sequenced (Diaz-Tatis //et al.//, 2019). | ||
=== Molecular markers === | === Molecular markers === | ||
- | //NA//. | ||
+ | //NA// | ||
=== Brief description === | === Brief description === | ||
- | Transgenic cassava plants that functionally express //Bs2// were regenerated. | + | |
+ | Transgenic cassava plants that functionally express //Bs2// were regenerated. | ||
---- | ---- | ||
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=== Synonyms === | === Synonyms === | ||
- | //NA//. | ||
+ | //NA// | ||
=== Source === | === Source === | ||
- | Cassava. | ||
+ | Cassava (Li //et al.//, 2017a). | ||
=== Status (identified, | === Status (identified, | ||
- | Sequenced. | ||
+ | Sequenced (Li //et al.//, 2017a). | ||
=== Molecular markers === | === Molecular markers === | ||
- | //NA//. | ||
+ | //NA// | ||
=== Brief description === | === Brief description === | ||
- | // | + | |
+ | // | ||
---- | ---- | ||
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=== Synonyms === | === Synonyms === | ||
+ | //NA// | ||
=== Source === | === Source === | ||
- | Cassava. | ||
+ | Cassava cultivar South China 124 (Li //et al.//, 2017b). | ||
=== Status (identified, | === Status (identified, | ||
- | Sequenced. | ||
+ | Sequenced (Li //et al.//, 2017b). | ||
=== Molecular markers === | === Molecular markers === | ||
- | //NA//. | ||
+ | //NA// | ||
=== Brief description === | === Brief description === | ||
- | //MebZIP3// and //MebZIP5// conferred improved disease resistance against cassava bacterial blight, with more callose depositions. | + | |
+ | //MebZIP3// and //MebZIP5// conferred improved disease resistance against cassava bacterial blight, with more callose depositions | ||
---- | ---- | ||
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=== Synonyms === | === Synonyms === | ||
- | //NA//. | ||
+ | //NA// | ||
=== Source === | === Source === | ||
- | Cassava. | ||
+ | Cassava cultivas South China 124 (Li //et al.//, 2018). | ||
=== Status (identified, | === Status (identified, | ||
- | Sequenced. | ||
+ | Sequenced (Li //et al.//, 2018). | ||
=== Molecular markers === | === Molecular markers === | ||
- | //NA//. | ||
+ | //NA// | ||
=== Brief description === | === Brief description === | ||
- | Through overexpression in [[https:// | + | |
+ | Through overexpression in //Nicotiana benthamiana//, | ||
---- | ---- | ||
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=== Synonyms === | === Synonyms === | ||
- | //NA//. | ||
+ | //NA// | ||
=== Source === | === Source === | ||
- | Cassava cultivar MCOL22. | ||
+ | Cassava cultivar MCOL22 (Pereira //et al.//, 2003). | ||
=== Status (identified, | === Status (identified, | ||
- | Sequenced. | ||
+ | Sequenced (Pereira //et al.//, 2003). | ||
=== Molecular markers === | === Molecular markers === | ||
- | //NA//. | ||
+ | //NA// | ||
=== Brief description === | === Brief description === | ||
- | Polymorphisms between cultivars generally reflected geographic origin, but there was also an association with resistance to CBB, indicating that MEPX1 could be a potentially useful marker for this trait (Pereira //et al//., 2003). | + | |
+ | Polymorphisms between cultivars generally reflected geographic origin, but there was also an association with resistance to CBB, indicating that MEPX1 could be a potentially useful marker for this trait (Pereira //et al.//, 2003). | ||
---- | ---- | ||
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=== Synonyms === | === Synonyms === | ||
- | //NA//. | ||
+ | //NA// | ||
=== Source === | === Source === | ||
- | Cassava F1 mapping population. | ||
+ | Cassava F1 mapping population, derived from a cross between cultivar TMS30572 and cultivar CM2177-2 (Fregene //et al.//, 1997). | ||
=== Status (identified, | === Status (identified, | ||
- | Mapped. | ||
+ | Mapped (Soto //et al.//, 2017). | ||
=== Molecular markers === | === Molecular markers === | ||
- | Various defence related candidate genes. | ||
+ | Various defence related candidate genes (Soto //et al.//, 2017). | ||
=== Brief description === | === Brief description === | ||
- | Based on composite interval mapping analysis, | + | |
+ | Based on composite interval mapping analysis, | ||
---- | ---- | ||
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=== Synonyms === | === Synonyms === | ||
- | //NA//. | ||
+ | //NA// | ||
=== Source === | === Source === | ||
- | Cassava. | ||
+ | Cassava cultivar South China 124 (Wei //et al.//, 2018a). | ||
=== Status (identified, | === Status (identified, | ||
- | Sequenced. | ||
+ | Sequenced (Wei //et al.//, 2018a). | ||
=== Molecular markers === | === Molecular markers === | ||
- | //NA//. | ||
+ | //NA// | ||
=== Brief description === | === Brief description === | ||
- | Gene expression assays showed that the transcripts of //MeRAVs// were commonly regulated after //Xanthomonas axonopodis// pv // | + | |
+ | Gene expression assays showed that the transcripts of //MeRAVs// were commonly regulated after //Xpm// challenge | ||
---- | ---- | ||
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=== Synonyms === | === Synonyms === | ||
- | //NA//. | ||
+ | //NA// | ||
=== Source === | === Source === | ||
- | Cassava. | ||
+ | Cassava cultivar South China 124 (Wei //et al.//, 2018). | ||
=== Status (identified, | === Status (identified, | ||
- | Sequenced. | ||
+ | Sequenced (Wei //et al.//, 2018). | ||
=== Molecular markers === | === Molecular markers === | ||
- | //NA//. | ||
+ | //NA// | ||
=== Brief description === | === Brief description === | ||
- | Through transient expression in //Nicotiana benthamiana// | + | |
+ | Through transient expression in //Nicotiana benthamiana// | ||
---- | ---- | ||
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=== Synonyms === | === Synonyms === | ||
- | //NA//. | ||
+ | //NA// | ||
=== Source === | === Source === | ||
- | Cassava. | ||
+ | Cassava cultivar South China 124 (Yan //et al.//, 2017). | ||
=== Status (identified, | === Status (identified, | ||
- | Sequenced. | ||
+ | Sequenced (Yan //et al.//, 2017). | ||
=== Molecular markers === | === Molecular markers === | ||
- | //NA//. | ||
+ | //NA// | ||
=== Brief description === | === Brief description === | ||
- | Taken together, MeWRKY20 and MeATG8a/ | + | |
+ | Taken together, MeWRKY20 and MeATG8a/ | ||
---- | ---- | ||
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===== References ===== | ===== References ===== | ||
- | Cohn M, Bart RS, Shybut M //et al//. (2014). // | + | Cohn M, Bart RS, Shybut M, Dahlbeck D, Gomez M, Morbitzer R, Hou BH, Frommer WB, Lahaye T, Staskawicz BJ (2014). // |
- | Cohn M, Morbitzer R, Lahaye T, Staskawicz J (2016). Comparison of gene activation by two TAL effectors from // | + | Cohn M, Morbitzer R, Lahaye T, Staskawicz J (2016). Comparison of gene activation by two TAL effectors from // |
- | Diaz-Tatis, PA, Herrera-Corzo M, Ochoa Cabezas JC //et al//. (2018). The overexpression of //RXam1//, a cassava gene coding for an RLK, confers disease resistance to // | + | Díaz Tatis PA, Herrera Corzo M, Ochoa Cabezas JC, Medina Cipagauta A, Prías MA, Verdier V, Chavarriaga Aguirre P, López Carrascal CE (2018). The overexpression of //RXam1//, a cassava gene coding for an RLK, confers disease resistance to // |
- | Diaz-Tatis PA, Ochoa JC, Garcia L //et al//. (2019). Interfamily transfer of //Bs2// from pepper to cassava (//Manihot esculenta// Crantz). Tropical Plant Pathol. | + | Diaz-Tatis PA, Ochoa JC, Garcia L, Chavarriaga P, Bernal AJ, López CE (2019). Interfamily transfer of //Bs2// from pepper to cassava (//Manihot esculenta// Crantz). Tropical Plant Pathol. 44: 225-237. DOI: [[https:// |
- | Li X, Fan S, Hu W //et al//. (2017a). Two Cassava Basic Leucine Zipper (bZIP) Transcription Factors (MebZIP3 and MebZIP5) Confer Disease Resistance against Cassava Bacterial Blight. Front. Plant Sci. (2017a) | + | Fregene M, Angel F, Gómez R, Rodriguez F, Chavarriaga P, Roca W, Tohme J, Bonierbale M (1997). A molecular genetic map of cassava (//Manihot esculenta// Crantz). Theor. Appl. Genet. 95: 431-441. DOI: [[https:// |
- | Li K, Xion X, Zhu S //et al//. (2017b). MeBIK1, a novel cassava receptor-like cytoplasmic kinase, regulates PTI response of transgenic Arabidopsis. Funct. Plant Biol. (2017b) 45: 658-667. DOI: [[https:// | + | Jorge V, Fregene MA, Duque MC, Bonierbale MW, Tohme J, Verdier V (2000). Genetic mapping of resistance to bacterial blight disease in cassava (//Manihot esculenta// Crantz). Theor. Appl. Genet. 101: 865-872. DOI: [[https:// |
- | Li X, Liu W, Li B //et al//. (2018). Identification and functional analysis of cassava DELLA proteins in plant disease resistance against cassava bacterial blight. Plant Physiol. Biochem. 124: 70-76. DOI: [[https:// | + | Li K, Xiong X, Zhu S, Liao H, Xiao X, Tang Z, Hong Y, Li C, Luo L, Zheng L, Niu X, Chen Y (2017a). MeBIK1, a novel cassava receptor-like cytoplasmic kinase, regulates PTI response of transgenic |
- | Pereira LF, Goodwin PH, Erickson L (2003). Cloning of a Peroxidase Gene from Cassava with Potential as a Molecular Marker for Resistance to Bacterial Blight. Brazilian Archives of Biology | + | Li X, Fan S, Hu W, Liu G, Wei Y, He C, Shi H (2017b). Two cassava basic leucine zipper (bZIP) transcription factors (MebZIP3 |
- | Soto Sedana JC, Mora Moreno RE, Mathew | + | Li X, Liu W, Li B, Liu G, Wei Y, He C, Shi H (2018). Identification and functional analysis of cassava DELLA proteins in plant disease resistance against cassava bacterial blight. Plant Physiol. Biochem. 124: 70-76. DOI: [[https:// |
- | Wei Y, Chang Y, Zeng H //et al//. (2018a). RAV transcription factors are essential for disease resistance against cassava bacterial blight via activation of melatonin biosynthesis genes. J. Pineal Res. 64: e12454. DOI: [[https:// | + | Pereira LF, Goodwin PH, Erickson L (2003). Cloning of a peroxidase gene from cassava with potential as a molecular marker for resistance to bacterial blight. Braz. Arch. Biol. Technol. 46: 149-154. DOI: [[http:// |
- | + | ||
- | Wei Y, Liu G, Chang Y (2018b). Heat shock transcription factor 3 regulates plant immune response through modulation of salicylic acid accumulation and signalling in cassava. Mol. Plant Pathol. 19: 2209-2220. DOI: [[https:// | + | Soto Sedano JC, Mora Moreno RE, Mathew B, Léon J, Gómez Cano FA, Ballvora A, López Carrascal CE (2017). Major novel QTL for resistance to cassava bacterial blight identified through a multi-environmental analysis. Front. Plant Sci. 8: 1169. DOI: [[https:// |
+ | |||
+ | Tai TH, Dahlbeck D, Clark ET, Gajiwala P, Pasion R, Whalen MC, Stall RE, Staskawicz BJ (1999). Expression of the Bs2 pepper gene confers resistance to bacterial spot disease in tomato. Proc. Natl. Acad. Sci. USA 96: 14153‐14158. DOI: [[https:// | ||
+ | |||
+ | Wei Y, Chang Y, Zeng H, Liu G, He C, Shi H (2018a). RAV transcription factors are essential for disease resistance against cassava bacterial blight via activation of melatonin biosynthesis genes. J. Pineal Res. 64: e12454. DOI: [[https:// | ||
+ | |||
+ | Wei Y, Liu G, Chang Y (2018b). Heat shock transcription factor 3 regulates plant immune response through modulation of salicylic acid accumulation and signalling in cassava. Mol. Plant Pathol. 19: 2209-2220. DOI: [[https:// | ||
+ | |||
+ | Yan Y, Wang P, He C, Shi H (2017). MeWRKY20 and its interacting and activating autophagy-related protein 8 (MeATG8) regulate plant disease resistance in cassava. Biochem. Biophys. Res. Commun. 494: 20-26. DOI: [[https:// | ||
+ | |||
+ | Zeng H, Xie Y, Liu G, Lin D, He C, Shi H (2018). Molecular identification of GAPDHs in cassava highlights the antagonism of MeGAPCs and MeATG8s in plant disease resistance against cassava bacterial blight. Plant Mol. Biol. 97: 201-214. DOI: [[https:// | ||
+ | |||
+ | ---- | ||
- | Yan Y, Wang P, He C, Shi H (2017). MeWRKY20 and its interacting and activating autophagy-related protein 8 (MeATG8) regulate plant disease resistance in cassava. Biochem. Biophys. Res. Commun. 494: 20-26. DOI: [[https:// | + | ===== Acknowledgements ===== |
- | Zeng H, Xie Y, Liu G //et al//. (2018). Molecular identification of GAPDHs | + | This fact sheet is based upon work from COST Action CA16107 EuroXanth, supported by COST (European Cooperation |