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typing:molecular_typing

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typing:molecular_typing [2026/08/07 10:24] – [References] rkoebniktyping:molecular_typing [2026/08/07 10:30] (current) – [References] rkoebnik
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 Coletta-Filho HD, Takita MA, de Souza AA, Aguilar-Vildoso CI, Machado MA (2001). Differentiation of strains of //Xylella fastidiosa// by a variable number of tandem repeat analysis. Appl. Environ. Microbiol. 67: 4091-4095. DOI: [[https://doi.org/10.1128/AEM.67.9.4091-4095.2001|10.1128/AEM.67.9.4091-4095.2001]] Coletta-Filho HD, Takita MA, de Souza AA, Aguilar-Vildoso CI, Machado MA (2001). Differentiation of strains of //Xylella fastidiosa// by a variable number of tandem repeat analysis. Appl. Environ. Microbiol. 67: 4091-4095. DOI: [[https://doi.org/10.1128/AEM.67.9.4091-4095.2001|10.1128/AEM.67.9.4091-4095.2001]]
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-Cubero J, Ayllón MA, Gell I, Melgarejo P, De Cal A, Martín-Sánchez PM, Pérez-Jiménez RM, Soria C, Segundo E, Larena I (2009). Detection of strawberry pathogens by real-time PCR. ISHS Acta Horticulturae 842: 263-266. DOI: [[https://doi.org/10.17660/ActaHortic.2009.842.44|10.17660/ActaHortic.2009.842.44]] 
  
 Curland RD, Gao L, Bull CT, Vinatzer BA, Dill-Macky R, Van Eck L, Ishimaru CA (2018). Genetic diversity and virulence of wheat and barley strains of //Xanthomonas translucens// from the Upper Midwestern United States. Phytopathology 108: 443-453. DOI: [[https://doi.org/10.1094/PHYTO-08-17-0271-R|10.1094/PHYTO-08-17-0271-R]] Curland RD, Gao L, Bull CT, Vinatzer BA, Dill-Macky R, Van Eck L, Ishimaru CA (2018). Genetic diversity and virulence of wheat and barley strains of //Xanthomonas translucens// from the Upper Midwestern United States. Phytopathology 108: 443-453. DOI: [[https://doi.org/10.1094/PHYTO-08-17-0271-R|10.1094/PHYTO-08-17-0271-R]]
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 Mhedbi-Hajri N, Hajri A, Boureau T, Darrasse A, Durand K, Brin C, Fischer-Le Saux M, Manceau C, Poussier S, Pruvost O, Lemaire C, Jacques MA (2013). Evolutionary history of the plant pathogenic bacterium //Xanthomonas axonopodis//. PLoS One 8: e58474. DOI: [[https://doi.org/10.1371/journal.pone.0058474|10.1371/journal.pone.0058474]] Mhedbi-Hajri N, Hajri A, Boureau T, Darrasse A, Durand K, Brin C, Fischer-Le Saux M, Manceau C, Poussier S, Pruvost O, Lemaire C, Jacques MA (2013). Evolutionary history of the plant pathogenic bacterium //Xanthomonas axonopodis//. PLoS One 8: e58474. DOI: [[https://doi.org/10.1371/journal.pone.0058474|10.1371/journal.pone.0058474]]
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-Mirmajlessi SM, Destefanis M, Gottsberger RA, Mänd M, Loit E (2015). PCR-based specific techniques used for detecting the most important pathogens on strawberry: a systematic review. Syst. Rev. 4: 9. DOI: [[https://doi.org/10.1186/2046-4053-4-9|10.1186/2046-4053-4-9]] 
  
 Mkandawire AB, Mabagala RB, Guzmán P, Gepts P, Gilbertson RL (2004). Genetic diversity and pathogenic variation of common blight bacteria (//Xanthomonas campestris// pv. //phaseoli// and //X. campestris// pv. //phaseoli// var. //fuscans//) suggests pathogen coevolution with the common bean. Phytopathology 94: 593-603. DOI: [[https://doi.org/10.1094/PHYTO.2004.94.6.593|10.1094/PHYTO.2004.94.6.593]] Mkandawire AB, Mabagala RB, Guzmán P, Gepts P, Gilbertson RL (2004). Genetic diversity and pathogenic variation of common blight bacteria (//Xanthomonas campestris// pv. //phaseoli// and //X. campestris// pv. //phaseoli// var. //fuscans//) suggests pathogen coevolution with the common bean. Phytopathology 94: 593-603. DOI: [[https://doi.org/10.1094/PHYTO.2004.94.6.593|10.1094/PHYTO.2004.94.6.593]]
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 Siddique F, Xiaofeng X, Zhe N, Mingxiu Y, Dawei L, Yuting L, Naibo Y, Younis H, Niaz N, Junhua Z (2025). Genetic diversity and population structure of phyllosphere-associated //Xanthomonas euvesicatoria// bacteria in //Physalis pubescens// based on BOX-PCR and ERIC-PCR in China. Plant Pathol. J. 41: 64-77. DOI: [[https://doi.org/10.5423/PPJ.OA.09.2024.0138|10.5423/PPJ.OA.09.2024.0138]] Siddique F, Xiaofeng X, Zhe N, Mingxiu Y, Dawei L, Yuting L, Naibo Y, Younis H, Niaz N, Junhua Z (2025). Genetic diversity and population structure of phyllosphere-associated //Xanthomonas euvesicatoria// bacteria in //Physalis pubescens// based on BOX-PCR and ERIC-PCR in China. Plant Pathol. J. 41: 64-77. DOI: [[https://doi.org/10.5423/PPJ.OA.09.2024.0138|10.5423/PPJ.OA.09.2024.0138]]
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-Stöger A, Ruppitsch W (2004). A rapid and sensitive method for the detection of //Xanthomonas fragariae//, causal agent of angular leafspot disease in strawberry plants, J. Microbiol. Methods 58: 281-284. DOI: [[https://doi.org/10.1016/j.mimet.2004.04.002|10.1016/j.mimet.2004.04.002]] 
  
 Timilsina S, Jibrin MO, Potnis N, Minsavage GV, Kebede M, Schwartz A, Bart R, Staskawicz B, Boyer C, Vallad GE, Pruvost O, Jones JB, Goss EM (2015). Multilocus sequence analysis of xanthomonads causing bacterial spot of tomato and pepper plants reveals strains generated by recombination among species and recent global spread of //Xanthomonas gardneri.// Appl. Environ. Microbiol. 81: 1520-1529. DOI: [[https://doi.org/10.1128/AEM.03000-14|10.1128/AEM.03000-14]] Timilsina S, Jibrin MO, Potnis N, Minsavage GV, Kebede M, Schwartz A, Bart R, Staskawicz B, Boyer C, Vallad GE, Pruvost O, Jones JB, Goss EM (2015). Multilocus sequence analysis of xanthomonads causing bacterial spot of tomato and pepper plants reveals strains generated by recombination among species and recent global spread of //Xanthomonas gardneri.// Appl. Environ. Microbiol. 81: 1520-1529. DOI: [[https://doi.org/10.1128/AEM.03000-14|10.1128/AEM.03000-14]]
  
 Trujillo CA, Arias-Rojas N, Poulin L, Medina CA, Tapiero A, Restrepo S, Koebnik R, Bernal AJ (2014). Population typing of the causal agent of cassava bacterial blight in the Eastern Plains of Colombia using two types of molecular markers. BMC Microbiol. 14: 161. DOI: [[https://doi.org/10.1186/1471-2180-14-161|10.1186/1471-2180-14-161]] Trujillo CA, Arias-Rojas N, Poulin L, Medina CA, Tapiero A, Restrepo S, Koebnik R, Bernal AJ (2014). Population typing of the causal agent of cassava bacterial blight in the Eastern Plains of Colombia using two types of molecular markers. BMC Microbiol. 14: 161. DOI: [[https://doi.org/10.1186/1471-2180-14-161|10.1186/1471-2180-14-161]]
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-Turechek WW, Hartung JS, McCallister J (2008). Development and optimization of a real-time detection assay for //Xanthomonas fragariae// in strawberry crown tissue with receiver operating characteristic curve analysis. Phytopathology 98: 359-368. DOI: [[https://doi.org/10.1094/PHYTO-98-3-0359|10.1094/PHYTO-98-3-0359]] 
  
 Vancheva T, Bogatzevska N, Moncheva P, Mitrev S, Vernière C, Koebnik R (2021). Molecular epidemiology of //Xanthomonas euvesicatoria// strains from the Balkan Peninsula revealed by a new multiple-locus variable-number tandem-repeat analysis scheme. Microorganisms 9: 536. DOI: [[https://doi.org/10.3390/microorganisms9030536|10.3390/microorganisms9030536]] Vancheva T, Bogatzevska N, Moncheva P, Mitrev S, Vernière C, Koebnik R (2021). Molecular epidemiology of //Xanthomonas euvesicatoria// strains from the Balkan Peninsula revealed by a new multiple-locus variable-number tandem-repeat analysis scheme. Microorganisms 9: 536. DOI: [[https://doi.org/10.3390/microorganisms9030536|10.3390/microorganisms9030536]]
  
 Vancheva T, Stoyanova M, Tasheva-Terzieva E, Bogatzevska N, Moncheva P (2018). Molecular methods for diversity assessment among xanthomonads of Bulgarian and Macedonian pepper. Braz. J. Microbiol. 49: 246-259. DOI: [[https://doi.org/10.1016/j.bjm.2017.08.011|10.1016/j.bjm.2017.08.011]] Vancheva T, Stoyanova M, Tasheva-Terzieva E, Bogatzevska N, Moncheva P (2018). Molecular methods for diversity assessment among xanthomonads of Bulgarian and Macedonian pepper. Braz. J. Microbiol. 49: 246-259. DOI: [[https://doi.org/10.1016/j.bjm.2017.08.011|10.1016/j.bjm.2017.08.011]]
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-Vandroemme J, Baeyen S, Van Vaerenbergh J, De Vos P, Maes M (2008). Sensitive real-time PCR detection of //Xanthomonas fragariae// in strawberry plants. Plant Pathol. 57: 438-444. DOI: [[https://doi.org/10.1111/j.1365-3059.2007.01813.x|10.1111/j.1365-3059.2007.01813.x ]] 
  
 Vernière C, Bui Thi Ngoc L, Jarne P, Ravigné V, Guérin F, Gagnevin L, Le Mai N, Chau NM, Pruvost O (2014). Highly polymorphic markers reveal the establishment of an invasive lineage of the citrus bacterial pathogen //Xanthomonas citri// pv. //citri// in its area of origin. Environ, Microbiol. 16: 2226-2237. doi: [[https://doi.org/10.1111/1462-2920.12369|10.1111/1462-2920.12369]] Vernière C, Bui Thi Ngoc L, Jarne P, Ravigné V, Guérin F, Gagnevin L, Le Mai N, Chau NM, Pruvost O (2014). Highly polymorphic markers reveal the establishment of an invasive lineage of the citrus bacterial pathogen //Xanthomonas citri// pv. //citri// in its area of origin. Environ, Microbiol. 16: 2226-2237. doi: [[https://doi.org/10.1111/1462-2920.12369|10.1111/1462-2920.12369]]
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-Wang H, Turechek WW (2016). A loop-mediated isothermal amplification assay and sample preparation procedure for sensitive detection of //Xanthomonas fragariae// in strawberry. PLoS One 11: e0147122. DOI: [[https://doi.org/10.1371/journal.pone.0147122|10.1371/journal.pone.0147122]] 
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-Wang H, Turechek WW (2020). Detection of viable //Xanthomonas fragariae// cells in strawberry using propidium monoazide and long-amplicon quantitative PCR. Plant Dis. 104: 1105-1112. DOI: [[https://doi.org/10.1094/PDIS-10-19-2248-RE|10.1094/PDIS-10-19-2248-RE]] 
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-Wang S, Wang P, Liao W, Liu X, Ouyang M, Lin S, Lin R, Xu Z, Chen G, Zhu B (2025). Rapid detection of //Xanthomonas fragariae// in strawberry using species-specific primers based on comparative genomics. Plant Dis. 109: 2197-2203. DOI: [[https://doi.org/10.1094/PDIS-11-24-2299-RE|10.1094/PDIS-11-24-2299-RE]] 
  
 Wei F, Liang X, Shi JC, Luo J, Qiu LJ, Li XX, Lu LJ, Wen Y, Feng J (2023). Pan-genomic analysis identifies the Chinese strain as a new subspecies of //Xanthomonas fragariae//. Plant Dis. 108: 45-49. DOI: [[https://doi.org/10.1094/PDIS-05-23-0933-SC|10.1094/PDIS-05-23-0933-SC]] Wei F, Liang X, Shi JC, Luo J, Qiu LJ, Li XX, Lu LJ, Wen Y, Feng J (2023). Pan-genomic analysis identifies the Chinese strain as a new subspecies of //Xanthomonas fragariae//. Plant Dis. 108: 45-49. DOI: [[https://doi.org/10.1094/PDIS-05-23-0933-SC|10.1094/PDIS-05-23-0933-SC]]
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-Weller SA, Beresford-Jones NJ, Hall J, Thwaites R, Parkinson N, Elphinstone JG (2007). Detection of //Xanthomonas fragariae// and presumptive detection of //Xanthomonas arboricola// pv. //fragariae//, from strawberry leaves, by real-time PCR. J. Microbiol. Methods 70: 379-383. doi: [[https://doi.org/10.1016/j.mimet.2007.05.018|10.1016/j.mimet.2007.05.018]] 
  
 Wonni I, Cottyn B, Detemmerman L, Dao S, Ouedraogo L, Sarra S, Tekete C, Poussier S, Corral R, Triplett L, Koita O, Koebnik R, Leach J, Szurek B, Maes M, Verdier V (2014). Analysis of //Xanthomonas oryzae// pv. //oryzicola// population in Mali and Burkina Faso reveals a high level of genetic and pathogenic diversity. Phytopathology 104: 520-531. DOI: [[https://doi.org/10.1094/PHYTO-07-13-0213-R|10.1094/PHYTO-07-13-0213-R]] Wonni I, Cottyn B, Detemmerman L, Dao S, Ouedraogo L, Sarra S, Tekete C, Poussier S, Corral R, Triplett L, Koita O, Koebnik R, Leach J, Szurek B, Maes M, Verdier V (2014). Analysis of //Xanthomonas oryzae// pv. //oryzicola// population in Mali and Burkina Faso reveals a high level of genetic and pathogenic diversity. Phytopathology 104: 520-531. DOI: [[https://doi.org/10.1094/PHYTO-07-13-0213-R|10.1094/PHYTO-07-13-0213-R]]
typing/molecular_typing.txt · Last modified: 2026/08/07 10:30 by rkoebnik

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