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plant:ryegrass [2020/07/01 14:47] – [Candidate gene: r_010d_c02] rkoebnikplant:ryegrass [2025/07/05 14:34] (current) – jfpothier
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-====== Italian ryegrass (//Lolium multiflorum// L.) ======+====== Plant Resistance Genes in Italian ryegrass (//Lolium multiflorum// L.) against //Xanthomonas// Infection ======
  
-Author: Florian Goettelmann\\ +Author: [[https://www.researchgate.net/profile/Florian_Goettelmann|Florian Goettelmann]]\\ 
-Internal reviewer: Jaroslav Michalko\\ +Internal reviewer: [[https://www.researchgate.net/profile/Jaroslav_Michalko|Jaroslav Michalko]]\\ 
-Expert reviewer: FIXME+Expert reviewer: [[https://www.researchgate.net/profile/Roland_Koelliker|Roland Kölliker]]\\
  
 ===== Pathogen: //Xanthomonas transluscens// pv. //graminis// (//Xtg//) ===== ===== Pathogen: //Xanthomonas transluscens// pv. //graminis// (//Xtg//) =====
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 //NA// //NA//
 +
 === Source === === Source ===
  
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 === Brief description === === Brief description ===
  
-Explained 66.8% of resistance in one greenhouse experiment and <del>13.3</del> 43.3% — //[[jaroslav.michalko@gmail.com|Jaroslav Michalko]] 2020/06/18 13:57//— and 83.8% of resistance in two field experiments (Studer //et al.//, 2006).+Explained 66.8% of resistance in one glasshouse experiment and 43.3% or 83.8% of resistance in two field experiments (Studer //et al.//, 2006).
  
 ---- ----
  
-==== Resistance gene: major LG4 QTL ====+==== Resistance gene: minor LG4 QTL ====
  
 === Synonyms === === Synonyms ===
  
 //NA// //NA//
 +
 === Source === === Source ===
  
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 === Molecular markers === === Molecular markers ===
  
-<del>P38M50_410 (AFLP)</del>. P32M50_410 (AFLP) — //[[jaroslav.michalko@gmail.com|Jaroslav Michalko]] 2020/06/18 14:01//—+P32M50_410 (AFLP).
  
 === Brief description === === Brief description ===
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 //NA// //NA//
 +
 === Source === === Source ===
  
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 === Molecular markers === === Molecular markers ===
  
-<del>P38M50_410 (AFLP). </del>LMgSSR04-06F (SSR) — //[[jaroslav.michalko@gmail.com|Jaroslav Michalko]] 2020/06/18 14:11//—+LMgSSR04-06F (SSR).
  
 === Brief description === === Brief description ===
  
-Explained <del>10.8</del> 2.9% — //[[jaroslav.michalko@gmail.com|Jaroslav Michalko]] 2020/06/18 14:15//— of resistance in one field experiment<sup><font 11.0pt/inherit;;#333333;;inherit></font></sup>  (Studer //et al.//, 2006).+Explained 2.9% of resistance in one field experiment (Studer //et al.//, 2006).
  
 ---- ----
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 //NA// //NA//
 +
 === Source === === Source ===
  
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 //NA// //NA//
 +
 === Source === === Source ===
  
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 ---- ----
  
-==== Candidate genes ==== +==== Candidate gene: F-BstCT-MseCA-188 ====
- +
-==== Candidate gene: F-BstCA-MseCG-188 F-BstCT-MseCA-188 — Jaroslav Michalko 2020/06/18 15:08 — ====+
  
 === Synonyms === === Synonyms ===
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 //NA// //NA//
 +
 === Brief description === === Brief description ===
  
-Showed homology to an ERBP transcription factor in //Oryza sativa// (Rechsteiner //et al.//, 2006).+Homology to an ERBP transcription factor in //Oryza sativa// (Rechsteiner //et al.//, 2006).
  
 ---- ----
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 //NA// //NA//
 +
 === Brief description === === Brief description ===
  
-Showed homology to <del>an EST sequence derived from //Vitis vinifera// infected with //Xylella fastidiosa// </del> a transforming growth factor TGF-β receptor-interacting protein from //O. sativa// (Rechsteiner //et al.//, 2006)<sup> </sup>  — //[[jaroslav.michalko@gmail.com|Jaroslav Michalko]] 2020/06/18 15:12//—+Homology to a transforming growth factor TGF-β receptor-interacting protein from //O. sativa// (Rechsteiner //et al.//, 2006)
  
 ---- ----
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 //NA// //NA//
 +
 === Brief description === === Brief description ===
  
-Showed homology to <del>transforming growth factor TGF-β receptor-interacting protein</del> an EST sequence derived from //Vitis vinifera// infected with //Xylella fastidiosa// (Rechsteiner //et al.//, 2006)<sup> </sup>  — //[[jaroslav.michalko@gmail.com|Jaroslav Michalko]] 2020/06/18 15:16//—.+Homology to an EST sequence derived from //Vitis vinifera// infected with //Xylella fastidiosa// (Rechsteiner //et al.//, 2006)
  
 ---- ----
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 //NA// //NA//
 +
 === Brief description === === Brief description ===
  
-Showed homology to guanine nucleotide-binding protein beta (GB1) in //Oryza sativa// (Rechsteiner //et al.//, 2006).+Homology to guanine nucleotide-binding protein beta (GB1) in //Oryza sativa// (Rechsteiner //et al.//, 2006).
  
 ---- ----
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 //NA// //NA//
 +
 === Brief description === === Brief description ===
  
-Belongs to the nodulin26-like intrinsic protein family of aquaporins (Wichmann //et al.//, 2011) .+Belongs to the nodulin26-like major intrinsic protein sub-family of aquaporins (Wichmann //et al.//, 2011) .
  
 ---- ----
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 //NA// //NA//
 +
 === Source === === Source ===
  
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 //NA// //NA//
 +
 === Brief description === === Brief description ===
  
-Belongs to the germin-like proteins family (Wichmann //et al.//, 2011).+Belongs to the germin-like protein family (Wichmann //et al.//, 2011).
  
 ---- ----
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 //NA// //NA//
 +
 === Source === === Source ===
  
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 //NA// //NA//
 +
 === Brief description === === Brief description ===
  
-Belongs to the <del>synaptoverbin</del> synaptobrevin-like vesicle-associated membrane protein <del>family</del> (Wichmann //et al.//, 2011) — //[[jaroslav.michalko@gmail.com|Jaroslav Michalko]] 2020/06/18 15:26//—.+Synaptobrevin-like vesicle-associated membrane protein (Wichmann //et al.//, 2011)
  
 ---- ----
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 //NA// //NA//
 +
 === Brief description === === Brief description ===
  
-Flowering gene (Wichmann //et al.//, 2011).+Flowering protein MFS18 (Wichmann //et al.//, 2011).
  
 ---- ----
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 //NA// //NA//
 +
 === Brief description === === Brief description ===
  
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 ---- ----
  
-==== Candidate gene: AT5G47850; CRINKLY4-related protein — Jaroslav Michalko 2020/06/18 15:35 — ====+==== Candidate gene: AT5G47850; CRINKLY4-related protein ====
  
 === Synonyms === === Synonyms ===
  
 //NA// //NA//
 +
 === Source === === Source ===
  
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 === Brief description === === Brief description ===
  
-Serine/threonine protein kinase-like CCR4-related protein (Knorst et al., 2019).+CRINKLY4 (serine/ threonine protein kinase-like protein CCR4)-related protein (Knorst //et al.//, 2019).
  
 ---- ----
  
-==== Candidate gene: AT3G07960; SWEET17 — Jaroslav Michalko 2020/06/18 15:37 — ====+==== Candidate gene: AT3G07960; SWEET17 ====
  
 === Synonyms === === Synonyms ===
  
 //NA// //NA//
 +
 === Source === === Source ===
  
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 === Brief description === === Brief description ===
  
-Belongs to the nodulin MtN3 family protein (Knorst et al., 2019).+Nodulin MtN3 family protein (SWEET17) (Knorst //et al.//, 2019).
  
 ---- ----
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 === Brief description === === Brief description ===
  
-Belongs to the<del> nodulin MtN3 family protein</del> BAK1- interacting receptor-like kinase 1 (Knorst et al., 2019)<sup> </sup>  — //[[jaroslav.michalko@gmail.com|Jaroslav Michalko]] 2020/06/18 15:40//— FIXME+BAK1-interacting receptor-like kinase 1 (Knorst //et al.//, 2019). 
 + 
 +---- 
 + 
 +==== Candidate gene: Pik-2-like disease resistance protein (evm.TU.chr4.21718) ==== 
 + 
 +=== Synonyms === 
 + 
 +Pik2-like 
 + 
 +=== Source === 
 + 
 +F2 mapping population derived from XtgArt03 (Studer et al. 2006). 
 + 
 +=== Status (identified, mapped, cloned, sequenced) === 
 + 
 +Identified and sequenced on LG 4 
 + 
 +=== Molecular markers === 
 + 
 +SNP markers / gene sequence 
 + 
 +=== Brief description === 
 + 
 +High-resolution bulked segregant analysis identified a ~300kb region associated with bacterial wilt resistance in Italian ryegrass (Goettelmann et al. 2024) 
 + 
 +---- 
 + 
 +==== Candidate gene: Cystein-rich kinase 6 (evm.TU.chr4.21727) ==== 
 + 
 +=== Synonyms === 
 + 
 +CRK 6 
 + 
 +=== Source === 
 + 
 +F2 mapping population derived from XtgArt03 (Studer et al. 2006). 
 + 
 +=== Status (identified, mapped, cloned, sequenced) === 
 + 
 +Identified and sequenced on LG 4 
 + 
 +=== Molecular markers === 
 + 
 +SNP markers / gene sequence 
 + 
 +=== Brief description === 
 + 
 +High-resolution bulked segregant analysis identified a ~300kb region associated with bacterial wilt resistance in Italian ryegrass (Goettelmann et al. 2024) 
 + 
 +---- 
 + 
 +==== Candidate gene: Cystein-rich kinase 8 (evm.TU.chr4.21737/8) ==== 
 + 
 +=== Synonyms === 
 + 
 +CRK 8 
 + 
 +=== Source === 
 + 
 +F2 mapping population derived from XtgArt03 (Studer et al. 2006). 
 + 
 +=== Status (identified, mapped, cloned, sequenced) === 
 + 
 +Identified and sequenced on LG 4 
 + 
 +=== Molecular markers === 
 + 
 +SNP markers / gene sequence 
 + 
 +=== Brief description === 
 + 
 +High-resolution bulked segregant analysis identified a ~300kb region associated with bacterial wilt resistance in Italian ryegrass (Goettelmann et al. 2024) 
 + 
 +---- 
 + 
 +==== Candidate gene: Serine protease inhibitor (evm.TU.chr4.21747-50) ==== 
 + 
 +=== Synonyms === 
 + 
 +SERPIN 
 + 
 +=== Source === 
 + 
 +F2 mapping population derived from XtgArt03 (Studer et al. 2006). 
 + 
 +=== Status (identified, mapped, cloned, sequenced) === 
 + 
 +Identified and sequenced on LG 4 
 + 
 +=== Molecular markers === 
 + 
 +SNP markers / gene sequence 
 + 
 +=== Brief description === 
 + 
 +High-resolution bulked segregant analysis identified a ~300kb region associated with bacterial wilt resistance in Italian ryegrass (Goettelmann et al. 2024) 
 + 
 +---- 
 + 
 +==== Candidate gene: Resistance gene analog 4-like disease resistance protein (evm.TU.chr4.21754) ==== 
 + 
 +=== Synonyms === 
 + 
 +RGA5-like 
 + 
 +=== Source === 
 + 
 +F2 mapping population derived from XtgArt03 (Studer et al. 2006). 
 + 
 +=== Status (identified, mapped, cloned, sequenced) === 
 + 
 +Identified and sequenced on LG 4 
 + 
 +=== Molecular markers === 
 + 
 +SNP markers / gene sequence 
 + 
 +=== Brief description === 
 + 
 +High-resolution bulked segregant analysis identified a ~300kb region associated with bacterial wilt resistance in Italian ryegrass (Goettelmann et al. 2024) 
 + 
 +---- 
 + 
 +==== Candidate gene: Resistance gene analog 5-like disease resistance protein (XLOC_055978/76) ==== 
 + 
 +=== Synonyms === 
 + 
 +RGA5-like 
 + 
 +=== Source === 
 + 
 +F2 mapping population derived from XtgArt03 (Studer et al. 2006). 
 + 
 +=== Status (identified, mapped, cloned, sequenced) === 
 + 
 +Identified and sequenced on LG 4 
 + 
 +=== Molecular markers === 
 + 
 +SNP markers / gene sequence 
 + 
 +=== Brief description === 
 + 
 +High-resolution bulked segregant analysis identified a ~300kb region associated with bacterial wilt resistance in Italian ryegrass (Goettelmann et al. 2024)
  
 ---- ----
  
 ===== References ===== ===== References =====
 +
 +Goettelmann F, Yutang C, Knorst V, Yates S, Copetti D, Studer B, Kölliker R (2024). High resolution bulked segregant analysis enables candidate gene identification for bacterial wilt resistance in Italian ryegrass (//Lolium multiflorum// Lam.). Plant J. 118: 1516-1527. DOI: [[https://doi.org/10.1111/tpj.16693|10.1111/tpj.16693]]
  
 Knorst V, Byrne S, Yates S, Asp T, Widmer F, Studer B, Kölliker R (2019). Pooled DNA sequencing to identify SNPs associated with a major QTL for bacterial wilt resistance in Italian ryegrass (//Lolium multiflorum// Lam.). Theor. Appl. Genet. 132: 947-958. DOI: [[https://doi.org/10.1007/s00122-018-3250-z|10.1007/s00122-018-3250-z]] Knorst V, Byrne S, Yates S, Asp T, Widmer F, Studer B, Kölliker R (2019). Pooled DNA sequencing to identify SNPs associated with a major QTL for bacterial wilt resistance in Italian ryegrass (//Lolium multiflorum// Lam.). Theor. Appl. Genet. 132: 947-958. DOI: [[https://doi.org/10.1007/s00122-018-3250-z|10.1007/s00122-018-3250-z]]
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 ===== Further reading ===== ===== Further reading =====
  
-Sapkota S, Mergoum M, Liu Z (2020). The translucens group of //Xanthomonas translucens//: Complicated and important pathogens causing bacterial leaf streak on cereals. Mol. Plant Pathol. 21: 291‐302. DOI: [[https://doi.org/10.1111/mpp.12909|doi:10.1111/mpp.12909]]+Sapkota S, Mergoum M, Liu Z (2020). The translucens group of //Xanthomonas translucens//: complicated and important pathogens causing bacterial leaf streak on cereals. Mol. Plant Pathol. 21: 291‐302. DOI: [[https://doi.org/10.1111/mpp.12909|doi:10.1111/mpp.12909]] 
 + 
 +---- 
 + 
 +===== Acknowledgements ===== 
 + 
 +This fact sheet is based upon work from COST Action CA16107 EuroXanth, supported by COST (European Cooperation in Science and Technology).
  
plant/ryegrass.1593611228.txt.gz · Last modified: 2023/01/09 10:20 (external edit)

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