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plant:rice [2025/10/01 08:45] – [References] rkoebnikplant:rice [2026/04/20 12:56] (current) – [References] rkoebnik
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 === Brief description === === Brief description ===
  
-NB-LRR class protein (Yoshimura //et al//., 1998). Cognate avirulence genes: TAL effector genes. Neutralized by interfering TAL effectors, so-called iTALEs or truncTALEs (Ji //et al//., 2016; Read //et al//., 2016).+NB-LRR class protein (Yoshimura //et al//., 1998). Cognate avirulence genes: TAL effector genes. Neutralized by interfering TAL effectors, so-called iTALEs or truncTALEs (Ji //et al//., 2016; Read //et al//., 2016). A novel variant of the //Xa1// gene (Os04g53120) from the rice variety SK20-28 (derived from a cross between Giganté and Kogoni 91-1) is characterized by a short deletion in the effector-binding element (EBE) of TAL effector, an extended leucine-rich repeat (LRR) domain and enhanced recognition specifcity toward local //Xanthomonas oryzae// pathotypes in Mali (Tekete //et al.//, 2026).
 === Other resources === === Other resources ===
  
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 === Source === === Source ===
  
-//Indica// rice accession RP9-3 from the Philippines. Also on  IR8 and IR944 lines (Ogawa //et al.//, 1991).+//Indica// rice accession RP9-3 from the Philippines. Also on IR8 and IR944 lines (Ogawa //et al.//, 1991).
 === Status (identified, mapped, cloned, sequenced) === === Status (identified, mapped, cloned, sequenced) ===
  
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 === Status (identified, mapped, cloned, sequenced) === === Status (identified, mapped, cloned, sequenced) ===
  
-Mapped on chromosome 4 (Bao //et al//., 2010). Cloned and sequenced (Ji //et al//., 2020). MSU ID: LOC_Os04g53120+Identified (Taura //et al.//, 1987). Mapped on chromosome 4 (Bao //et al//., 2010). Cloned and sequenced (Ji //et al//., 2020). MSU ID: LOC_Os04g53120
 === Molecular markers === === Molecular markers ===
  
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 === Status (identified, mapped, cloned, sequenced) === === Status (identified, mapped, cloned, sequenced) ===
  
-Mapped on chromosome 4 (Endo //et al//., 2009, 2012).+Identified (Ogawa //et al.//, 1989). Mapped on chromosome 4 (Endo //et al//., 2009, 2012).
 === Molecular markers === === Molecular markers ===
  
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 === Status (identified, mapped, cloned, sequenced) === === Status (identified, mapped, cloned, sequenced) ===
  
-Identified (Khush //et al.//, 1990). Mapped on chromosome 11 (Ronald //et al//., 1992). Cloned and sequenced (Song //et al//., 1995).+Identified (Khush //et al.//, 1990). Mapped on chromosome 11 (Ronald //et al//., 1992). Cloned and sequenced (Song //et al//., 1995). MSU ID: LOC_Os11g35500
 === Molecular markers === === Molecular markers ===
  
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 The immune receptor XA21 is cleaved by the rhomboid-like protease OsRBL3b, likely within its transmembrane domain, which protects grain set and male fertility in rice. This balance between reproduction and disease resistance through the specific expression of a rhomboid protease may be key to limiting the detrimental effects of an active immune response (Vergish et al., 2025). The immune receptor XA21 is cleaved by the rhomboid-like protease OsRBL3b, likely within its transmembrane domain, which protects grain set and male fertility in rice. This balance between reproduction and disease resistance through the specific expression of a rhomboid protease may be key to limiting the detrimental effects of an active immune response (Vergish et al., 2025).
  
 +The small secreted peptide OsRALF26, previously identified as an //Oryza//-specific ligand for FERONIA-like receptor 1 (OsFLR1), is also directly perceived by XA21. OsRALF26 as a host-derived ligand of XA21 is required for full activation of XA21-mediated immunity in distal tissues, consistent with a role for OsRALF26 in spatial propagation of XA21-dependent defence (Kwon //et al.//, 2026).
 === Other resources === === Other resources ===
  
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 [[https://funricegenes.github.io/LOC_Os11g46200/|FunRiceGenes]]. [[https://funricegenes.github.io/LOC_Os11g46200/|FunRiceGenes]].
 +
 +----
 +
 +==== Resistance gene: //Xa48// ====
 +
 +=== Synonyms ===
 +
 +//LOC_Os03g48370//
 +=== Source ===
 +
 +//Oryza sativa indica// Shuangkeza (Lin //et al.//, 2026).
 +=== Status (identified, mapped, cloned, sequenced) ===
 +
 +Identified and mapped on chromosome 3 (Lin //et al.//, 2026). Cloned and sequenced (Lin //et al.//, 2026).
 +=== Molecular markers ===
 +
 +InDel markers (Lin //et al.//, 2026).
 +=== Brief description ===
 +
 +Member of the nucleotide-binding site and leucine-rich repeat (NLR) receptor family. XA48 perceives the ancient pathogen effector XopG, activating effector-triggered immunity by degrading the negative regulator OsVOZ1/2 (Lin //et al.//, 2026).
  
 ---- ----
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 Bao S, Tan M, Lin X (2010). Genetic mapping of a bacterial blight resistance gene //Xa14// in rice. Acta Agronomica Sin. 36: 422-427. Bao S, Tan M, Lin X (2010). Genetic mapping of a bacterial blight resistance gene //Xa14// in rice. Acta Agronomica Sin. 36: 422-427.
  
-Bhatia SK, Vikal Y, Kaur P, Dhillon GS, Kaur G, Neelam K, Malik P, Lore JS, Khanna R, Singh K (2025). Introgression and mapping of a novel bacterial blight resistance gene //xa49(t)// from //Oryza rufipogon// acc. CR100098A into //O. sativa//. Phytopathology +Bhatia SK, Vikal Y, Kaur P, Dhillon GS, Kaur G, Neelam K, Malik P, Lore JS, Khanna R, Singh K (2025). Introgression and mapping of a novel bacterial blight resistance gene //xa49(t)// from //Oryza rufipogon// acc. CR100098A into //O. sativa//. Phytopathology 114: 2412-2420. DOI: [[https://doi.org/10.1094/PHYTO-02-24-0061-R|10.1094/PHYTO-02-24-0061-R]]
- <font 11.0pt/inherit;;inherit;;inherit>114: 2412-2420</font>  . DOI: [[https://doi.org/10.1094/PHYTO-02-24-0061-R|10.1094/PHYTO-02-24-0061-R]]+
  
 Busungu C, Taura S, Sakagami JI, Anai T, Ichitani K (2018). High-resolution mapping and characterization of //xa42//, a resistance gene against multiple //Xanthomonas oryzae// pv. //oryzae// races in rice (//Oryza sativa// L.). Breed. Sci. 68: 188-199. DOI: [[https://doi.org/10.1270/jsbbs.17094|10.1270/jsbbs.17094]] Busungu C, Taura S, Sakagami JI, Anai T, Ichitani K (2018). High-resolution mapping and characterization of //xa42//, a resistance gene against multiple //Xanthomonas oryzae// pv. //oryzae// races in rice (//Oryza sativa// L.). Breed. Sci. 68: 188-199. DOI: [[https://doi.org/10.1270/jsbbs.17094|10.1270/jsbbs.17094]]
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 Ji C, Ji Z, Liu B, Cheng H, Liu H, Liu S, Yang B, Chen G (2020). //Xa1// allelic //R// genes activate rice blight resistance suppressed by interfering TAL effectors. Plant Comm. 1: 100087. DOI: [[https://doi.org/10.1016/j.xplc.2020.100087|10.1016/j.xplc.2020.100087]] Ji C, Ji Z, Liu B, Cheng H, Liu H, Liu S, Yang B, Chen G (2020). //Xa1// allelic //R// genes activate rice blight resistance suppressed by interfering TAL effectors. Plant Comm. 1: 100087. DOI: [[https://doi.org/10.1016/j.xplc.2020.100087|10.1016/j.xplc.2020.100087]]
  
-Jiang GH, Xia ZH, Zhou YL, Wan J, Li DY, Chen RS (2006). Testifying the rice bacterial blight resistance gene //xa5// by genetic complementation and further analyzing //xa5// (//Xa5//) in comparison with its homolog TFIIAgamma1. Mol. Genet. Genomics 275: 354-366. DOI: [[https://doi.org/978-3-319- 45021-6_20/s00438-005-0091-7|978-3-319- 45021-6_20/s00438-005-0091-7]]+Jiang GH, Xia ZH, Zhou YL, Wan J, Li DY, Chen RS (2006). Testifying the rice bacterial blight resistance gene //xa5// by genetic complementation and further analyzing //xa5// (//Xa5//) in comparison with its homolog TFIIAgamma1. Mol. Genet. Genomics 275: 354-366. DOI: [[https://doi.org/10.1007/s00438-005-0091-7|10.1007/s00438-005-0091-7]]
  
 Kaku H, Ogawa T (2001). Genetic Analysis of the relationship between the browning reaction and bacterial blight resistance gene //Xa3// in rice. J. Gen. Plant Pathol. 67: 228-230. DOI: [[https://doi.org/10.1007/PL00013017|10.1007/PL00013017]] Kaku H, Ogawa T (2001). Genetic Analysis of the relationship between the browning reaction and bacterial blight resistance gene //Xa3// in rice. J. Gen. Plant Pathol. 67: 228-230. DOI: [[https://doi.org/10.1007/PL00013017|10.1007/PL00013017]]
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 Kurata N, Yamazaki Y (2006). Oryzabase. An integrated biological and genome information database for rice. Plant Physiol. 140: 12-17. DOI: [[https://doi.org/10.1104/pp.105.063008|10.1104/pp.105.063008]] Kurata N, Yamazaki Y (2006). Oryzabase. An integrated biological and genome information database for rice. Plant Physiol. 140: 12-17. DOI: [[https://doi.org/10.1104/pp.105.063008|10.1104/pp.105.063008]]
 +
 +Kwon OK, Jeong AR, Park CJ (2026). OsRALF26 serves as an endogenous signal recognised by XA21 to promote robust and distal resistance in rice. Plant Biotechnol. J., in press. DOI: [[https://doi.org/10.1111/pbi.70622|10.1111/pbi.70622]]
  
 Lee KS, Khush GS (2000). Genetic analysis of resistance to bacterial blight, //Xanthomonas oryzae// pv. //oryzae// rice. Rice Genet. Newsl. 17: 72. Full text @ [[https://shigen.nig.ac.jp/rice/oryzabase/asset/rgn/vol17/d28.html|Oryzabase]] and @ [[https://archive.gramene.org/newsletters/rice_genetics/rgn17/d28.html|Gramene]] Lee KS, Khush GS (2000). Genetic analysis of resistance to bacterial blight, //Xanthomonas oryzae// pv. //oryzae// rice. Rice Genet. Newsl. 17: 72. Full text @ [[https://shigen.nig.ac.jp/rice/oryzabase/asset/rgn/vol17/d28.html|Oryzabase]] and @ [[https://archive.gramene.org/newsletters/rice_genetics/rgn17/d28.html|Gramene]]
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 Liang LQ, Wang CY, Zeng LX, Wang WJ, Feng JQ, Chen B, Su J, Chen S, Shang FD, Zhu XY, Lin F (2017). The rice cultivar Baixiangzhan harbours a recessive gene //xa42// (//t//) determining resistance against //Xanthomonas oryzae// pv. //oryzae//. Plant Breed. 136: 603-609. DOI: [[https://doi.org/10.1111/pbr.12493|10.1111/pbr.12493]] Liang LQ, Wang CY, Zeng LX, Wang WJ, Feng JQ, Chen B, Su J, Chen S, Shang FD, Zhu XY, Lin F (2017). The rice cultivar Baixiangzhan harbours a recessive gene //xa42// (//t//) determining resistance against //Xanthomonas oryzae// pv. //oryzae//. Plant Breed. 136: 603-609. DOI: [[https://doi.org/10.1111/pbr.12493|10.1111/pbr.12493]]
  
-Lin XH, Zhang DP,Xie YF, Gao HP, Zhang Q (1996). Identifying and mapping a new gene for bacterial blight resistance in rice based on RFLP markers. Phytopathology 86: 1156-1159. Full text @ [[https://www.apsnet.org/publications/phytopathology/backissues/Documents/1996Abstracts/Phyto_86_1156.htm|APS]]+Lin H, Chen F, Cheng G, Yan B, Yuan M, Qiu J, Lu Y, Suo M, Chen Y, Wang Y, Cui K, Gong X, Liu S, Liu B, Liu J, Wang J, Li R, Mao B, Xu J, Jeon JS, Huang X, Han B, Yang DL, Gao Q, Xu H, Deng Y, Chen G, He Z (2026). Asymmetric selection of a rice immune module and rebuild of disease resistance. Nature, in press. DOI: [[https://doi.org/10.1038/s41586-026-10361-6|10.1038/s41586-026-10361-6]] 
 + 
 +Lin XH, Zhang DP, Xie YF, Gao HP, Zhang Q (1996). Identifying and mapping a new gene for bacterial blight resistance in rice based on RFLP markers. Phytopathology 86: 1156-1159. Full text @ [[https://www.apsnet.org/publications/phytopathology/backissues/Documents/1996Abstracts/Phyto_86_1156.htm|APS]]
  
 Liu HX, Liu FQ, Hu BS, Yang WF, Chen ZY, Xu ZG (2004). Virulence of //Xanthomonas oryzae// pv. //oryzae// on rice near-isogenic lines with single resistance gene and pyramiding lines in China. Agric. Sci. China 3: 764-769. Liu HX, Liu FQ, Hu BS, Yang WF, Chen ZY, Xu ZG (2004). Virulence of //Xanthomonas oryzae// pv. //oryzae// on rice near-isogenic lines with single resistance gene and pyramiding lines in China. Agric. Sci. China 3: 764-769.
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 Neelam K, Mahajan R, Gupta V, Bhatia D, Gill BK, Komal R, Lore JS, Mangat GS, Singh K (2020). High-resolution genetic mapping of a novel bacterial blight resistance gene //xa-45 (t)// identified from //Oryza glaberrima// and transferred to //Oryza sativa//. Theor. Appl. Genet. 133: 689-705. DOI: [[https://doi.org/10.1007/s00122-019-03501-2|10.1007/s00122-019-03501-2]] Neelam K, Mahajan R, Gupta V, Bhatia D, Gill BK, Komal R, Lore JS, Mangat GS, Singh K (2020). High-resolution genetic mapping of a novel bacterial blight resistance gene //xa-45 (t)// identified from //Oryza glaberrima// and transferred to //Oryza sativa//. Theor. Appl. Genet. 133: 689-705. DOI: [[https://doi.org/10.1007/s00122-019-03501-2|10.1007/s00122-019-03501-2]]
 +
 +Ogawa T, Kaku H, Yamamoto T (1989). Resistance gene of rice cultivar Asominori to bacterial blight of rice. Jpn. J. Breed. 39: S196-S197.
  
 Ogawa T, Morinaka T, Fujii K, Kimura T (1978). Inheritance of resistance of rice varieties Kogyoku and Java 14 to bacterial group V of //Xanthomonas oryzae//. Jpn. J. Phytopathol. 44: 137-141. Ogawa T, Morinaka T, Fujii K, Kimura T (1978). Inheritance of resistance of rice varieties Kogyoku and Java 14 to bacterial group V of //Xanthomonas oryzae//. Jpn. J. Phytopathol. 44: 137-141.
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 Streubel J, Pesce C, Hutin M, Koebnik R, Boch J, Szurek B (2013). Five phylogenetically close rice //SWEET// genes confer TAL effector-mediated susceptibility to //Xanthomonas oryzae// pv. //oryzae//. New Phytol. 200: 808-819. DOI: [[https://doi.org/10.1111/nph.12411|10.1111/nph.12411]] Streubel J, Pesce C, Hutin M, Koebnik R, Boch J, Szurek B (2013). Five phylogenetically close rice //SWEET// genes confer TAL effector-mediated susceptibility to //Xanthomonas oryzae// pv. //oryzae//. New Phytol. 200: 808-819. DOI: [[https://doi.org/10.1111/nph.12411|10.1111/nph.12411]]
  
-Sugio A, Yang B, Zhu T, White FF (2007). Two type III effector genes of //Xanthomonas oryzae// pv. //oryzae// control the induction of the host genes OsTFIIAgamma1 and OsTFX1 during bacterial blight of rice. Proc Natl. Acad. Sci. U. S. A. 104: 10720-10725. DOI: [[https://doi.org/10.1073/pnas.0701742104|10.1073/pnas.0701742104]]+Sugio A, Yang B, Zhu T, White FF (2007). Two type III effector genes of //Xanthomonas oryzae// pv. //oryzae// control the induction of the host genes //OsTFIIAγ1// and //OsTFX1// during bacterial blight of rice. Proc Natl. Acad. Sci. U. S. A. 104: 10720-10725. DOI: [[https://doi.org/10.1073/pnas.0701742104|10.1073/pnas.0701742104]]
  
 Sun X, Yang Z, Wang S, Zhang Q (2003). Identification of a 47-kb DNA fragment containing //Xa4//, a locus for bacterial blight resistance in rice. Theor. Appl. Genet. 106: 683-687. DOI: [[https://doi.org/10.1007/s00122-002-1117-8|10.1007/s00122-002-1117-8]] Sun X, Yang Z, Wang S, Zhang Q (2003). Identification of a 47-kb DNA fragment containing //Xa4//, a locus for bacterial blight resistance in rice. Theor. Appl. Genet. 106: 683-687. DOI: [[https://doi.org/10.1007/s00122-002-1117-8|10.1007/s00122-002-1117-8]]
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 Taura S, Ichitani K (2023). Chromosomal location of //xa19//, a broad-spectrum rice bacterial blight resistant gene from XM5, a mutant line from IR24. Plants (Basel) 12: 602. DOI: [[https://doi.org/10.3390/plants12030602|10.3390/plants12030602]] Taura S, Ichitani K (2023). Chromosomal location of //xa19//, a broad-spectrum rice bacterial blight resistant gene from XM5, a mutant line from IR24. Plants (Basel) 12: 602. DOI: [[https://doi.org/10.3390/plants12030602|10.3390/plants12030602]]
 +
 +Taura S, Ogawa T, Tabien RE, Khush GS, Yoshimura A, Omura T (1987). The specific reaction of Taichung Native 1 to Philippine races of bacterial blight and inheritance of resistance to race 5 (PXO 112). Rice Genet. Newsl. 4: 101-102. Full text @ [[https://shigen.nig.ac.jp/rice/oryzabase/asset/rgn/vol4/v4p101.html|Oryzabase]]
  
 Taura S, Ogawa T, Yoshimura A, Ikea R, Omura T (1991). Identification of a recessive resistance gene in induced mutant line XM5 of rice to rice bacterial blight. Japan. J. Breed. 41: 427-432. DOI: [[https://doi.org/10.1270/jsbbs1951.41.427|10.1270/jsbbs1951.41.427]] Taura S, Ogawa T, Yoshimura A, Ikea R, Omura T (1991). Identification of a recessive resistance gene in induced mutant line XM5 of rice to rice bacterial blight. Japan. J. Breed. 41: 427-432. DOI: [[https://doi.org/10.1270/jsbbs1951.41.427|10.1270/jsbbs1951.41.427]]
  
 Taura S, Ogawa T, Yoshimura A, Ikeda R, Iwata N (1992). Identification of a recessive resistance gene to rice bacterial blight of mutant line XM6, //Oryza sativa// L. Japan. J. Breed. 42: 7-13. DOI: [[https://doi.org/10.1270/jsbbs1951.42.7|10.1270/jsbbs1951.42.7]] Taura S, Ogawa T, Yoshimura A, Ikeda R, Iwata N (1992). Identification of a recessive resistance gene to rice bacterial blight of mutant line XM6, //Oryza sativa// L. Japan. J. Breed. 42: 7-13. DOI: [[https://doi.org/10.1270/jsbbs1951.42.7|10.1270/jsbbs1951.42.7]]
 +
 +Tekete C, Dembélé AB, Doucouré H, Konaté L, Keïta I, Kanté M, Sarra S, Szurek B, Le Bars M, Koïta O (2026). Field validation of a novel //Xa1// variant in rice variety SK20-28 for resistance to bacterial diseases in the Banfara Lowlands of Mali. Int. J. Agron. 2026: 2572173. DOI: [[https://doi.org/10.1155/ioa/2572173|10.1155/ioa/2572173]]
  
 Tian D, Wang J, Zeng X, Gu K, Qiu C, Yang X, Zhou Z, Goh M, Luo Y, Murata-Hori M, White FF, Yin Z (2014). The rice TAL effector-dependent resistance protein XA10 triggers cell death and calcium depletion in the endoplasmic reticulum. Plant Cell 26: 497-515. DOI: [[https://doi.org/10.1105/tpc.113.119255|10.1105/tpc.113.119255]] Tian D, Wang J, Zeng X, Gu K, Qiu C, Yang X, Zhou Z, Goh M, Luo Y, Murata-Hori M, White FF, Yin Z (2014). The rice TAL effector-dependent resistance protein XA10 triggers cell death and calcium depletion in the endoplasmic reticulum. Plant Cell 26: 497-515. DOI: [[https://doi.org/10.1105/tpc.113.119255|10.1105/tpc.113.119255]]
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 Takatsuji H (2014). Development of disease-resistant rice using regulatory components of induced disease resistance. Front. Plant Sci. 5: 630. DOI: [[https://doi.org/10.3389/fpls.2014.00630|10.3389/fpls.2014.00630]] Takatsuji H (2014). Development of disease-resistant rice using regulatory components of induced disease resistance. Front. Plant Sci. 5: 630. DOI: [[https://doi.org/10.3389/fpls.2014.00630|10.3389/fpls.2014.00630]]
 +
 +Tauqeer Z, Tauqeer A, Memon SP, Younas MU, Wang G, Islam W (2025). Unraveling rice defense against bacterial blight: molecular pathways, resistance genes and breeding perspectives. Microb. Pathog. 209: 108128. DOI: [[https://doi.org/10.1016/j.micpath.2025.108128|10.1016/j.micpath.2025.108128]]
  
 Vemanna RS, Bakade R, Bharti P, Kumar MKP, Sreeman SM, Senthil-Kumar M, Makarla U (2019). Cross-talk signaling in rice during combined drought and bacterial blight stress. Front. Plant Sci. 10: 193. DOI: [[https://doi.org/10.3389/fpls.2019.00193|10.3389/fpls.2019.00193]] Vemanna RS, Bakade R, Bharti P, Kumar MKP, Sreeman SM, Senthil-Kumar M, Makarla U (2019). Cross-talk signaling in rice during combined drought and bacterial blight stress. Front. Plant Sci. 10: 193. DOI: [[https://doi.org/10.3389/fpls.2019.00193|10.3389/fpls.2019.00193]]
plant/rice.1759304723.txt.gz · Last modified: 2025/10/01 08:45 by rkoebnik

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