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plant:rice [2025/06/05 14:31] – [References] rkoebnikplant:rice [2025/07/21 14:22] (current) – [References] rkoebnik
Line 1: Line 1:
 ====== Plant Resistance Genes in Rice (//Oryza// spp.) against //Xanthomonas// Infection ====== ====== Plant Resistance Genes in Rice (//Oryza// spp.) against //Xanthomonas// Infection ======
  
-Author: [[https://www.researchgate.net/profile/Ralf_Koebnik|Ralf Koebnik]]+Author: [[https://www.researchgate.net/profile/Ralf_Koebnik|Ralf Koebnik]]\\
  
 **Additional information on rice resistance genes can be found at the [[https://shigen.nig.ac.jp/rice/oryzabase/|Oryzabase]] database (Kurata & Yamazaki, 2006).** **Additional information on rice resistance genes can be found at the [[https://shigen.nig.ac.jp/rice/oryzabase/|Oryzabase]] database (Kurata & Yamazaki, 2006).**
Line 12: Line 12:
  
 //NA// //NA//
 +
 === Source === === Source ===
  
 Temperate //japonica// rice cultivar Kogyoku from Japan (Sakaguchi, 1967). Temperate //japonica// rice cultivar Kogyoku from Japan (Sakaguchi, 1967).
 +
 === Status (identified, mapped, cloned, sequenced) === === Status (identified, mapped, cloned, sequenced) ===
  
 Mapped on chromosome 4 (Sakaguchi, 1967). Cloned and sequenced (Yoshimura //et al//., 1998). Mapped on chromosome 4 (Sakaguchi, 1967). Cloned and sequenced (Yoshimura //et al//., 1998).
 +
 === Molecular markers === === Molecular markers ===
  
 RAPD markers (Yoshimura //et al//., 1995). RAPD markers (Yoshimura //et al//., 1995).
 +
 === Brief description === === Brief description ===
  
 NB-LRR class protein (Yoshimura //et al//., 1998). Cognate avirulence genes: TAL effector genes. Neutralized by interfering TAL effectors, so-called iTALEs or truncTALEs (Ji //et al//., 2016; Read //et al//., 2016). NB-LRR class protein (Yoshimura //et al//., 1998). Cognate avirulence genes: TAL effector genes. Neutralized by interfering TAL effectors, so-called iTALEs or truncTALEs (Ji //et al//., 2016; Read //et al//., 2016).
 +
 === Other resources === === Other resources ===
  
Line 35: Line 40:
  
 //NA// //NA//
 +
 === Source === === Source ===
  
 //Indica// rice cultivar Te-tep from Vietnam (Sakaguchi, 1967). //Indica// rice cultivar Te-tep from Vietnam (Sakaguchi, 1967).
 +
 === Status (identified, mapped, cloned, sequenced) === === Status (identified, mapped, cloned, sequenced) ===
  
 Mapped on the long arm of chromosome 4 (He //et al//., 2006). Cloned and sequenced (Ji //et al//., 2020). Mapped on the long arm of chromosome 4 (He //et al//., 2006). Cloned and sequenced (Ji //et al//., 2020).
 +
 === Molecular markers === === Molecular markers ===
  
 SSR markers (He //et al//., 2006). SSR markers (He //et al//., 2006).
 +
 === Brief description === === Brief description ===
  
Line 55: Line 64:
  
 //Xa-w// (Ezuka //et al//., 1975). //Xa-w// (Ezuka //et al//., 1975).
 +
 === Source === === Source ===
  
 //Japonica// rice cultivar Wase Aikoku 3 from Japan (Ezuka //et al//., 1975). Other cultivars: Chugoku 45 (Ogawa //et al//., 1986a), Java 14 (Ogawa //et al//., 1986a). //Japonica// rice cultivar Wase Aikoku 3 from Japan (Ezuka //et al//., 1975). Other cultivars: Chugoku 45 (Ogawa //et al//., 1986a), Java 14 (Ogawa //et al//., 1986a).
 +
 === Status (identified, mapped, cloned, sequenced) === === Status (identified, mapped, cloned, sequenced) ===
  
 Mapped on chromosome 11 (Yoshimura //et al//., 1992). Cloned and sequenced (Sun //et al//., 2004; Xiang //et al//., 2006). Mapped on chromosome 11 (Yoshimura //et al//., 1992). Cloned and sequenced (Sun //et al//., 2004; Xiang //et al//., 2006).
 +
 === Molecular markers === === Molecular markers ===
  
 RFLP marker (Yoshimura //et al//., 1995), PCR-based SNP markers (Hur //et al//., 2013). RFLP marker (Yoshimura //et al//., 1995), PCR-based SNP markers (Hur //et al//., 2013).
 +
 === Brief description === === Brief description ===
  
 Allelic to //Xa6// (Ogawa //et al//., 1986b); allelic to //Xa26// (Xiang //et al//., 2006); NB-LRR class protein. Cognate avirulence gene: //avrXa3// (Li //et al//., 2004). Allelic to //Xa6// (Ogawa //et al//., 1986b); allelic to //Xa26// (Xiang //et al//., 2006); NB-LRR class protein. Cognate avirulence gene: //avrXa3// (Li //et al//., 2004).
 +
 === Other resources === === Other resources ===
  
Line 78: Line 92:
  
 //NA// //NA//
 +
 === Source === === Source ===
  
 //Indica// rice accession TKM 6 from India. Other accessions: IR 20, IR 22. //Indica// rice accession TKM 6 from India. Other accessions: IR 20, IR 22.
 +
 === Status (identified, mapped, cloned, sequenced) === === Status (identified, mapped, cloned, sequenced) ===
  
 Mapped on chromosome 11 (Wang //et al//., 2001; Sun //et al//., 2003). Cloned and sequenced (Hu //et al//., 2017). Mapped on chromosome 11 (Wang //et al//., 2001; Sun //et al//., 2003). Cloned and sequenced (Hu //et al//., 2017).
 +
 === Molecular markers === === Molecular markers ===
  
 RFLP marker (Yoshimura //et al//., 1995). RFLP marker (Yoshimura //et al//., 1995).
 +
 === Brief description === === Brief description ===
  
 Wall-associated kinase (WAK) (Hu //et al//., 2017). Wall-associated kinase (WAK) (Hu //et al//., 2017).
 +
 === Other resources === === Other resources ===
  
Line 101: Line 120:
  
 //NA// //NA//
 +
 === Source === === Source ===
  
Line 112: Line 132:
  
 RFLP markers (Yoshimura //et al//., 1995). RFLP markers (Yoshimura //et al//., 1995).
 +
 === Brief description === === Brief description ===
  
 TFIIAγ5 transcription factor (Iyer & McCouch, 2004; Jiang //et al//., 2006). Direct interaction of several TALEs with TFIIAγ5 is required for activation of disease susceptibility genes (Yuan //et al//., 2016). Suppression or mutation of TFIIAγ5 can also reduce bacterial streak, another disease of rice caused by TALE-carrying //Xanthomonas oryzae// pv. //oryzicola// (Yuan //et al//., 2016). Cognate avirulence genes: //avrxa5//, //pthXo6//, //pthXo7// (Sugio //et al//., 2007; Zou //et al//., 2010). TFIIAγ5 transcription factor (Iyer & McCouch, 2004; Jiang //et al//., 2006). Direct interaction of several TALEs with TFIIAγ5 is required for activation of disease susceptibility genes (Yuan //et al//., 2016). Suppression or mutation of TFIIAγ5 can also reduce bacterial streak, another disease of rice caused by TALE-carrying //Xanthomonas oryzae// pv. //oryzicola// (Yuan //et al//., 2016). Cognate avirulence genes: //avrxa5//, //pthXo6//, //pthXo7// (Sugio //et al//., 2007; Zou //et al//., 2010).
 +
 === Other resources === === Other resources ===
  
Line 126: Line 148:
  
 //NA// //NA//
 +
 === Source === === Source ===
  
Line 133: Line 156:
  
 Mapped on chromosome 11 (Sidhu //et al//., 1978). Mapped on chromosome 11 (Sidhu //et al//., 1978).
 +
 === Molecular markers === === Molecular markers ===
  
 //NA// //NA//
 +
 === Brief description === === Brief description ===
  
Line 147: Line 172:
  
 //NA// //NA//
 +
 === Source === === Source ===
  
Line 154: Line 180:
  
 Identified (Sidhu //et al//., 1978). Mapped on chromosome 6 (Lee & Khush, 2000; Porter //et al//., 2003). Cloned & sequenced (Chen //et al//., 2021; Luo //et al//., 2021). Identified (Sidhu //et al//., 1978). Mapped on chromosome 6 (Lee & Khush, 2000; Porter //et al//., 2003). Cloned & sequenced (Chen //et al//., 2021; Luo //et al//., 2021).
 +
 === Molecular markers === === Molecular markers ===
  
 //NA// //NA//
 +
 === Brief description === === Brief description ===
  
Line 168: Line 196:
  
 //NA// //NA//
 +
 === Source === === Source ===
  
Line 175: Line 204:
  
 Identified (Sidhu //et al//., 1978). Mapped on chromosome 7 (Singh //et al//., 2002). Identified (Sidhu //et al//., 1978). Mapped on chromosome 7 (Singh //et al//., 2002).
 +
 === Molecular markers === === Molecular markers ===
  
 //NA// //NA//
 +
 === Brief description === === Brief description ===
  
Line 189: Line 220:
  
 //NA// //NA//
 +
 === Source === === Source ===
  
Line 196: Line 228:
  
 Mapped on chromosome 11 (Singh //et al//., 1983; Ogawa //et al//., 1988). Mapped on chromosome 11 (Singh //et al//., 1983; Ogawa //et al//., 1988).
 +
 === Molecular markers === === Molecular markers ===
  
 //NA// //NA//
 +
 === Brief description === === Brief description ===
  
Line 210: Line 244:
  
 //NA// //NA//
 +
 === Source === === Source ===
  
 Rice accession Cas 209 from Senegal. Xa10-like genes in rice cultivar Nipponbare (Wang //et al//., 2017). Rice accession Cas 209 from Senegal. Xa10-like genes in rice cultivar Nipponbare (Wang //et al//., 2017).
 +
 === Status (identified, mapped, cloned, sequenced) === === Status (identified, mapped, cloned, sequenced) ===
  
 Mapped on chromosome 11 (Yoshimura //et al//., 1983). Cloned and sequenced (Tian //et al//., 2014). Mapped on chromosome 11 (Yoshimura //et al//., 1983). Cloned and sequenced (Tian //et al//., 2014).
 +
 === Molecular markers === === Molecular markers ===
  
 RAPD marker (Yoshimura //et al//., 1995). RAPD marker (Yoshimura //et al//., 1995).
 +
 === Brief description === === Brief description ===
  
 The TAL effector-dependent resistance protein XA10 triggers cell death and calcium depletion in the endoplasmic reticulum (Tian //et al//., 2014). The predicted membrane protein shares 50% sequence identity with the executor R protein XA23 (Wang //et al//., 2015). Induction of //Xa10//-like genes in the rice cultivar Nipponbare confers disease resistance to bacterial blight (Wang //et al//., 2017). Cognate avirulence gene: //avrXa10//. The TAL effector-dependent resistance protein XA10 triggers cell death and calcium depletion in the endoplasmic reticulum (Tian //et al//., 2014). The predicted membrane protein shares 50% sequence identity with the executor R protein XA23 (Wang //et al//., 2015). Induction of //Xa10//-like genes in the rice cultivar Nipponbare confers disease resistance to bacterial blight (Wang //et al//., 2017). Cognate avirulence gene: //avrXa10//.
 +
 === Other resources === === Other resources ===
  
Line 233: Line 272:
  
 //NA// //NA//
 +
 === Source === === Source ===
  
 //Indica// rice accessions IR8 and IR944 from the Philippines. //Indica// rice accessions IR8 and IR944 from the Philippines.
 +
 === Status (identified, mapped, cloned, sequenced) === === Status (identified, mapped, cloned, sequenced) ===
  
Line 243: Line 284:
  
 //NA// //NA//
 +
 === Brief description === === Brief description ===
  
Line 254: Line 296:
  
 //NA// //NA//
 +
 === Source === === Source ===
  
 Temperate //japonica// rice cultivar Kogyoku from Japan. Other cultivars: Te-tep, Java-14. Temperate //japonica// rice cultivar Kogyoku from Japan. Other cultivars: Te-tep, Java-14.
 +
 === Status (identified, mapped, cloned, sequenced) === === Status (identified, mapped, cloned, sequenced) ===
  
Line 264: Line 308:
  
 //NA// //NA//
 +
 === Brief description === === Brief description ===
  
Line 275: Line 320:
  
 //Os-11N8//, //OsSWEET11//. //Os-11N8//, //OsSWEET11//.
 +
 === Source === === Source ===
  
Line 282: Line 328:
  
 Mapped on chromosome 8 (Chu //et al.//, 2006). Cloned and sequenced (Yang //et al//., 2006; Yuan //et al//., 2009). Mapped on chromosome 8 (Chu //et al.//, 2006). Cloned and sequenced (Yang //et al//., 2006; Yuan //et al//., 2009).
 +
 === Molecular markers === === Molecular markers ===
  
 //NA// //NA//
 +
 === Brief description === === Brief description ===
  
Line 296: Line 344:
  
 //NA// //NA//
 +
 === Source === === Source ===
  
 //Japonica// rice accession TN1 from Taiwan. //Japonica// rice accession TN1 from Taiwan.
 +
 === Status (identified, mapped, cloned, sequenced) === === Status (identified, mapped, cloned, sequenced) ===
  
 Mapped on chromosome 4 (Bao //et al//., 2010). Cloned and sequenced (Ji //et al//., 2020). Mapped on chromosome 4 (Bao //et al//., 2010). Cloned and sequenced (Ji //et al//., 2020).
 +
 === Molecular markers === === Molecular markers ===
  
 //NA// //NA//
 +
 === Brief description === === Brief description ===
  
Line 316: Line 368:
  
 //NA// //NA//
 +
 === Source === === Source ===
  
Line 323: Line 376:
  
 Identified (Nakai //et al//., 1988; Gnanamanickam //et al//., 1999). Identified (Nakai //et al//., 1988; Gnanamanickam //et al//., 1999).
 +
 === Molecular markers === === Molecular markers ===
  
 //NA// //NA//
 +
 === Brief description === === Brief description ===
  
Line 337: Line 392:
  
 //NA// //NA//
 +
 === Source === === Source ===
  
 //Indica// rice cultivar Te-tep from Vietnam. //Indica// rice cultivar Te-tep from Vietnam.
 +
 === Status (identified, mapped, cloned, sequenced) === === Status (identified, mapped, cloned, sequenced) ===
  
Line 347: Line 404:
  
 //NA// //NA//
 +
 === Brief description === === Brief description ===
  
Line 358: Line 416:
  
 //Xa1-as(t)//. //Xa1-as(t)//.
 +
 === Source === === Source ===
  
 //Japonica// rice cultivar Asominori from South Korea. //Japonica// rice cultivar Asominori from South Korea.
 +
 === Status (identified, mapped, cloned, sequenced) === === Status (identified, mapped, cloned, sequenced) ===
  
 Mapped on chromosome 4 (Endo //et al//., 2009, 2012). Mapped on chromosome 4 (Endo //et al//., 2009, 2012).
 +
 === Molecular markers === === Molecular markers ===
  
 Ph phenol reaction, which turns rice seeds soaked in phenol solution dark brown; blast resistance gene //Pias(t)//; DNA markers (Ise //et al//., 1998; Endo //et al//., 2009, 2012). Ph phenol reaction, which turns rice seeds soaked in phenol solution dark brown; blast resistance gene //Pias(t)//; DNA markers (Ise //et al//., 1998; Endo //et al//., 2009, 2012).
 +
 === Brief description === === Brief description ===
  
Line 378: Line 440:
  
 //NA// //NA//
 +
 === Source === === Source ===
  
 //Indica// rice accession IR24 from the Philippines and //japonica// rice cultivar Toyonishiki from Japan. Other cultivar: Miyang23. //Indica// rice accession IR24 from the Philippines and //japonica// rice cultivar Toyonishiki from Japan. Other cultivar: Miyang23.
 +
 === Status (identified, mapped, cloned, sequenced) === === Status (identified, mapped, cloned, sequenced) ===
  
 Identified (Liu //et al//., 2004; Kurata & Yamazaki, 2006) Identified (Liu //et al//., 2004; Kurata & Yamazaki, 2006)
 +
 === Molecular markers === === Molecular markers ===
  
 //NA// //NA//
 +
 === Brief description === === Brief description ===
  
Line 398: Line 464:
  
 //NA// //NA//
 +
 === Source === === Source ===
  
Line 405: Line 472:
  
 Identified (Taura //et al//., 1991). Mapped on chromosome 7 (Taura & Ichitani, 2023). Identified (Taura //et al//., 1991). Mapped on chromosome 7 (Taura & Ichitani, 2023).
 +
 === Molecular markers === === Molecular markers ===
  
Line 420: Line 488:
  
 //NA// //NA//
 +
 === Source === === Source ===
  
Line 427: Line 496:
  
 Identified (Taura //et al//., 1992). Identified (Taura //et al//., 1992).
 +
 === Molecular markers === === Molecular markers ===
  
 //NA// //NA//
 +
 === Brief description === === Brief description ===
  
Line 441: Line 512:
  
 //NA// //NA//
 +
 === Source === === Source ===
  
 //Oryza longistaminata// line from Mali. //Oryza longistaminata// line from Mali.
 +
 === Status (identified, mapped, cloned, sequenced) === === Status (identified, mapped, cloned, sequenced) ===
  
 Mapped on chromosome 11 (Ronald //et al//., 1992). Cloned and sequenced (Song //et al//., 1995). Mapped on chromosome 11 (Ronald //et al//., 1992). Cloned and sequenced (Song //et al//., 1995).
 +
 === Molecular markers === === Molecular markers ===
  
 RAPD and RFLP markers (Ronald //et al//., 1992). Intragenic AFLP marker (Nanayakkara //et al//., 2020). RAPD and RFLP markers (Ronald //et al//., 1992). Intragenic AFLP marker (Nanayakkara //et al//., 2020).
 +
 === Brief description === === Brief description ===
  
 Cognate avirulence gene: //raxX// (Pruitt //et al//., 2015). Cognate avirulence gene: //raxX// (Pruitt //et al//., 2015).
 +
 +The immune receptor XA21 is cleaved by the rhomboid-like protease OsRBL3b, likely within its transmembrane domain, which protects grain set and male fertility in rice. This balance between reproduction and disease resistance through the specific expression of a rhomboid protease may be key to limiting the detrimental effects of an active immune response (Vergish et al., 2025).
 +
 === Other resources === === Other resources ===
  
Line 464: Line 542:
  
 //NA// //NA//
 +
 === Source === === Source ===
  
 //Japonica// rice cultivar Zhachanglong (ZCL) from China. //Japonica// rice cultivar Zhachanglong (ZCL) from China.
 +
 === Status (identified, mapped, cloned, sequenced) === === Status (identified, mapped, cloned, sequenced) ===
  
 Identified (Lin //et al//., 1996). Mapped on chromosome 11 (Lin //et al//., 1996; Wang //et al//., 2003; Sun //et al//., 2004). Identified (Lin //et al//., 1996). Mapped on chromosome 11 (Lin //et al//., 1996; Wang //et al//., 2003; Sun //et al//., 2004).
 +
 === Molecular markers === === Molecular markers ===
  
 //NA// //NA//
 +
 === Brief description === === Brief description ===
  
Line 484: Line 566:
  
 //NA// //NA//
 +
 === Source === === Source ===
  
 //Oryza rufipogon// accession RBB16. //Oryza rufipogon// accession RBB16.
 +
 === Status (identified, mapped, cloned, sequenced) === === Status (identified, mapped, cloned, sequenced) ===
  
 Identified (Zhang //et al.//, 1994). Mapped on chromosome 11 (Zhang //et al//., 1998; Zhang //et al//., 2001). Cloned and sequenced (Wang //et al//., 2015). Identified (Zhang //et al.//, 1994). Mapped on chromosome 11 (Zhang //et al//., 1998; Zhang //et al//., 2001). Cloned and sequenced (Wang //et al//., 2015).
 +
 === Molecular markers === === Molecular markers ===
  
 SSR markers (Zhang //et al//., 1998). SSR markers (Zhang //et al//., 1998).
 +
 === Brief description === === Brief description ===
  
 113-amino acid protein that shares 50% sequence identity with the executor R protein XA10 (Wang //et al//., 2015). Cognate avirulence gene: //avrXa23//. 113-amino acid protein that shares 50% sequence identity with the executor R protein XA10 (Wang //et al//., 2015). Cognate avirulence gene: //avrXa23//.
 +
 === Other resources === === Other resources ===
  
Line 507: Line 594:
  
 //NA// //NA//
 +
 === Source === === Source ===
  
Line 518: Line 606:
  
 //NA// //NA//
 +
 === Brief description === === Brief description ===
  
Line 529: Line 618:
  
 //OsSWEET13//. //OsSWEET13//.
 +
 === Source === === Source ===
  
 //Indica// rice cultivar Minghui (Chen //et al//., 2002) and its somaclonal mutant HX-3 (Gao //et al//., 2001; Gao & Sun, 2003) from China. //Indica// rice cultivar Minghui (Chen //et al//., 2002) and its somaclonal mutant HX-3 (Gao //et al//., 2001; Gao & Sun, 2003) from China.
 +
 === Status (identified, mapped, cloned, sequenced) === === Status (identified, mapped, cloned, sequenced) ===
  
 Identified (Gao //et al//., 2001; Chen //et al//., 2002). Mapped on centromeric region of chromosome 12 (Chen //et al//., 2002; Liu //et al//., 2011). Cloned and sequenced (Liu //et al//., 2011). Identified (Gao //et al//., 2001; Chen //et al//., 2002). Mapped on centromeric region of chromosome 12 (Chen //et al//., 2002; Liu //et al//., 2011). Cloned and sequenced (Liu //et al//., 2011).
 +
 === Molecular markers === === Molecular markers ===
  
 RFLP markers (Chen //et al//., 2002). RFLP markers (Chen //et al//., 2002).
 +
 === Brief description === === Brief description ===
  
 SWEET-type protein (Liu //et al//., 2011). Phenomenon of dominance reversal; heterozygous plants are susceptible at an early developmental stage but resistant at a late developmental stage (Liu //et al//., 2011). Cognate avirulence gene: //pthXo2// (Zhou //et al//., 2015). SWEET-type protein (Liu //et al//., 2011). Phenomenon of dominance reversal; heterozygous plants are susceptible at an early developmental stage but resistant at a late developmental stage (Liu //et al//., 2011). Cognate avirulence gene: //pthXo2// (Zhou //et al//., 2015).
 +
 === Other resources === === Other resources ===
  
Line 552: Line 646:
  
 //Xa3// //Xa3//
 +
 === Source === === Source ===
  
Line 559: Line 654:
  
 Mapped on the terminal region of the long arm of chromosome 11 (Yang //et al//., 2003). Cloned and sequenced (Sun //et al//., 2004). Mapped on the terminal region of the long arm of chromosome 11 (Yang //et al//., 2003). Cloned and sequenced (Sun //et al//., 2004).
 +
 === Molecular markers === === Molecular markers ===
  
 RFLP and SSR markers (Yang //et al//., 2003). RFLP and SSR markers (Yang //et al//., 2003).
 +
 === Brief description === === Brief description ===
  
 NB-LRR class protein (Sun //et al//., 2004). NB-LRR class protein (Sun //et al//., 2004).
 +
 === Other resources === === Other resources ===
  
Line 576: Line 674:
  
 //NA// //NA//
 +
 === Source === === Source ===
  
Line 583: Line 682:
  
 Identified (Lee //et al//., 2003). Identified (Lee //et al//., 2003).
 +
 === Molecular markers === === Molecular markers ===
  
 //NA// //NA//
 +
 === Brief description === === Brief description ===
  
Line 597: Line 698:
  
 //NA// //NA//
 +
 === Source === === Source ===
  
Line 604: Line 706:
  
 Identified (Lee //et al//., 2003). Identified (Lee //et al//., 2003).
 +
 === Molecular markers === === Molecular markers ===
  
 //NA// //NA//
 +
 === Brief description === === Brief description ===
  
Line 618: Line 722:
  
 //NA// //NA//
 +
 === Source === === Source ===
  
 //Oryza minuta// (acc. no. 101141). //Oryza minuta// (acc. no. 101141).
 +
 === Status (identified, mapped, cloned, sequenced) === === Status (identified, mapped, cloned, sequenced) ===
  
 Identified (Amante-Bordeos //et al//., 1992). Mapped on the long arm of chromosome 6 (Gu //et al//., 2004). Cloned and sequenced (Gu //et al//., 2005). Identified (Amante-Bordeos //et al//., 1992). Mapped on the long arm of chromosome 6 (Gu //et al//., 2004). Cloned and sequenced (Gu //et al//., 2005).
 +
 === Molecular markers === === Molecular markers ===
  
 AFLP, RAPD and RFLP markers (Gu //et al//., 2004). AFLP, RAPD and RFLP markers (Gu //et al//., 2004).
 +
 === Brief description === === Brief description ===
  
 Cognate avirulence gene: //avrXa27// (Gu //et al//., 2005). Cognate avirulence gene: //avrXa27// (Gu //et al//., 2005).
 +
 === Other resources === === Other resources ===
  
Line 641: Line 750:
  
 //NA// //NA//
 +
 === Source === === Source ===
  
Line 648: Line 758:
  
 Identified (Lee //et al//., 2003). Identified (Lee //et al//., 2003).
 +
 === Molecular markers === === Molecular markers ===
  
 //NA// //NA//
 +
 === Brief description === === Brief description ===
  
Line 662: Line 774:
  
 //NA// //NA//
 +
 === Source === === Source ===
  
 //Oryza officinalis// (B5). //Oryza officinalis// (B5).
 +
 === Status (identified, mapped, cloned, sequenced) === === Status (identified, mapped, cloned, sequenced) ===
  
 Mapped on chromosome 1 (Tan //et al//., 2004). Mapped on chromosome 1 (Tan //et al//., 2004).
 +
 === Molecular markers === === Molecular markers ===
  
 //NA// //NA//
 +
 === Brief description === === Brief description ===
  
Line 682: Line 798:
  
 //NA// //NA//
 +
 === Source === === Source ===
  
 //Oryza rufipogon// (Y238). //Oryza rufipogon// (Y238).
 +
 === Status (identified, mapped, cloned, sequenced) === === Status (identified, mapped, cloned, sequenced) ===
  
 Mapped on chromosome 11 (Tan //et al//., 2004). Mapped on chromosome 11 (Tan //et al//., 2004).
 +
 === Molecular markers === === Molecular markers ===
  
 //NA// //NA//
 +
 === Brief description === === Brief description ===
  
Line 702: Line 822:
  
 //NA// //NA//
 +
 === Source === === Source ===
  
 //Japonica// rice cultivar Zhachanglong (ZCL) from China. //Japonica// rice cultivar Zhachanglong (ZCL) from China.
 +
 === Status (identified, mapped, cloned, sequenced) === === Status (identified, mapped, cloned, sequenced) ===
  
 Identified and mapped on chromosome 4 (Wang //et al//., 2009). Cloned and sequenced (Ji //et al//., 2020). Identified and mapped on chromosome 4 (Wang //et al//., 2009). Cloned and sequenced (Ji //et al//., 2020).
 +
 === Molecular markers === === Molecular markers ===
  
 RFLP markers (Wang //et al//., 2009) RFLP markers (Wang //et al//., 2009)
 +
 === Brief description === === Brief description ===
  
Line 722: Line 846:
  
 //NA// //NA//
 +
 === Source === === Source ===
  
 //Oryza australiensis// accession C4064. //Oryza australiensis// accession C4064.
 +
 === Status (identified, mapped, cloned, sequenced) === === Status (identified, mapped, cloned, sequenced) ===
  
 Identified and mapped on the long arm of chromosome 11 (Zheng //et al//., 2009). Identified and mapped on the long arm of chromosome 11 (Zheng //et al//., 2009).
 +
 === Molecular markers === === Molecular markers ===
  
 SSR and EST markers (Zheng //et al//., 2009). SSR and EST markers (Zheng //et al//., 2009).
 +
 === Brief description === === Brief description ===
  
Line 742: Line 870:
  
 //NA// //NA//
 +
 === Source === === Source ===
  
 //Indica// rice cultivar Ba7 from Thailand. //Indica// rice cultivar Ba7 from Thailand.
 +
 === Status (identified, mapped, cloned, sequenced) === === Status (identified, mapped, cloned, sequenced) ===
  
 Mapped on the long arm of chromosome 6 (Korinsak //et al//., 2009; Natraj Kumar //et al//., 2012). Mapped on the long arm of chromosome 6 (Korinsak //et al//., 2009; Natraj Kumar //et al//., 2012).
 +
 === Molecular markers === === Molecular markers ===
  
 SSR markers (Korinsak //et al//., 2009). SSR markers (Korinsak //et al//., 2009).
 +
 === Brief description === === Brief description ===
  
Line 762: Line 894:
  
 //NA// //NA//
 +
 === Source === === Source ===
  
 //Oryza brachyantha// (acc. no. 101232). //Oryza brachyantha// (acc. no. 101232).
 +
 === Status (identified, mapped, cloned, sequenced) === === Status (identified, mapped, cloned, sequenced) ===
  
 Identified (Ram //et al//., 2010). Identified (Ram //et al//., 2010).
 +
 === Molecular markers === === Molecular markers ===
  
 //NA// //NA//
 +
 === Brief description === === Brief description ===
  
Line 782: Line 918:
  
 //NA// //NA//
 +
 === Source === === Source ===
  
 //Oryza minuta// (acc. no. 101133) from the Philippines. //Oryza minuta// (acc. no. 101133) from the Philippines.
 +
 === Status (identified, mapped, cloned, sequenced) === === Status (identified, mapped, cloned, sequenced) ===
  
 Mapped on chromosome 11 (Guo //et al//., 2010). Mapped on chromosome 11 (Guo //et al//., 2010).
 +
 === Molecular markers === === Molecular markers ===
  
 //NA// //NA//
 +
 === Brief description === === Brief description ===
  
Line 802: Line 942:
  
 //NA// //NA//
 +
 === Source === === Source ===
  
Line 809: Line 950:
  
 Mapped on chromosome 11 (Miao //et al//., 2010). Mapped on chromosome 11 (Miao //et al//., 2010).
 +
 === Molecular markers === === Molecular markers ===
  
 //NA// //NA//
 +
 === Brief description === === Brief description ===
  
Line 823: Line 966:
  
 //NA// //NA//
 +
 === Source === === Source ===
  
 //NA// //NA//
 +
 === Status (identified, mapped, cloned, sequenced) === === Status (identified, mapped, cloned, sequenced) ===
  
Line 833: Line 978:
  
 //NA// //NA//
 +
 === Brief description === === Brief description ===
  
Line 844: Line 990:
  
 //Xa30(t)// //Xa30(t)//
 +
 === Source === === Source ===
  
 //Oryza nivara// IRGC81825. //Oryza nivara// IRGC81825.
 +
 === Status (identified, mapped, cloned, sequenced) === === Status (identified, mapped, cloned, sequenced) ===
  
 Identified (Kaur //et al//., 2006). Mapped on long arm of chromosome 4 (Cheema //et al//., 2008). Identified (Kaur //et al//., 2006). Mapped on long arm of chromosome 4 (Cheema //et al//., 2008).
 +
 === Molecular markers === === Molecular markers ===
  
 SSR markers (Cheema //et al//., 2008). SSR markers (Cheema //et al//., 2008).
 +
 === Brief description === === Brief description ===
  
Line 864: Line 1014:
  
 //NA// //NA//
 +
 === Source === === Source ===
  
Line 871: Line 1022:
  
 Mapped on chromosome 11 (Zhang //et al//., 2014). Mapped on chromosome 11 (Zhang //et al//., 2014).
 +
 === Molecular markers === === Molecular markers ===
  
 //NA// //NA//
 +
 === Brief description === === Brief description ===
  
Line 885: Line 1038:
  
 //NA// //NA//
 +
 === Source === === Source ===
  
Line 892: Line 1046:
  
 Mapped on chromosome 11 (Kim //et al//., 2015). Mapped on chromosome 11 (Kim //et al//., 2015).
 +
 === Molecular markers === === Molecular markers ===
  
 //NA// //NA//
 +
 === Brief description === === Brief description ===
  
Line 906: Line 1062:
  
 //Os-11N3//, //OsSWEET14//. //Os-11N3//, //OsSWEET14//.
 +
 === Source === === Source ===
  
 Severel accessions of //Oryza glaberrima// and //Oryza barthii//. Severel accessions of //Oryza glaberrima// and //Oryza barthii//.
 +
 === Status (identified, mapped, cloned, sequenced) === === Status (identified, mapped, cloned, sequenced) ===
  
 Cloned and sequenced (Hutin //et al//., 2015). Cloned and sequenced (Hutin //et al//., 2015).
 +
 === Molecular markers === === Molecular markers ===
  
 Intragenic AFLP marker (Hutin //et al//., 2015). Intragenic AFLP marker (Hutin //et al//., 2015).
 +
 === Brief description === === Brief description ===
  
Line 926: Line 1086:
  
 //NA// //NA//
 +
 === Source === === Source ===
  
Line 933: Line 1094:
  
 Mapped on chromosome 3 (Busungu //et al//., 2016, 2018; Lian //et al//., 2017). Mapped on chromosome 3 (Busungu //et al//., 2016, 2018; Lian //et al//., 2017).
 +
 === Molecular markers === === Molecular markers ===
  
 //NA// //NA//
 +
 === Brief description === === Brief description ===
  
Line 947: Line 1110:
  
 //NA// //NA//
 +
 === Source === === Source ===
  
Line 958: Line 1122:
  
 //NA// //NA//
 +
 === Brief description === === Brief description ===
  
Line 969: Line 1134:
  
 //NA// //NA//
 +
 === Source === === Source ===
  
 ZhangPu wild rice (//Oryza rufipogon//). ZhangPu wild rice (//Oryza rufipogon//).
 +
 === Status (identified, mapped, cloned, sequenced) === === Status (identified, mapped, cloned, sequenced) ===
  
 Mapped on chromosome 11 (Huang //et al//., 2023). Mapped on chromosome 11 (Huang //et al//., 2023).
 +
 === Molecular markers === === Molecular markers ===
  
 Inde1-18 (Huang //et al//., 2023). Inde1-18 (Huang //et al//., 2023).
 +
 === Brief description === === Brief description ===
  
Line 989: Line 1158:
  
 //NA// //NA//
 +
 === Source === === Source ===
  
Line 1000: Line 1170:
  
 //NA// //NA//
 +
 === Brief description === === Brief description ===
  
Line 1011: Line 1182:
  
 //NA// //NA//
 +
 === Source === === Source ===
  
 //Oryza glaberrima// accession IRGC 102600B. //Oryza glaberrima// accession IRGC 102600B.
 +
 === Status (identified, mapped, cloned, sequenced) === === Status (identified, mapped, cloned, sequenced) ===
  
 Identified (Neelam //et al.//, 2020). Mapped on chromosome 8 (Babbar //et al.//, 2024). Identified (Neelam //et al.//, 2020). Mapped on chromosome 8 (Babbar //et al.//, 2024).
 +
 === Molecular markers === === Molecular markers ===
  
 Indel marker at the locus LOC_Os08g42410 (Babbar //et al.//, 2024). Indel marker at the locus LOC_Os08g42410 (Babbar //et al.//, 2024).
 +
 === Brief description === === Brief description ===
  
Line 1031: Line 1206:
  
 //NA// //NA//
 +
 === Source === === Source ===
  
 //NA// //NA//
 +
 === Status (identified, mapped, cloned, sequenced) === === Status (identified, mapped, cloned, sequenced) ===
  
 Mapped on chromosome 11 (Chen //et al.//, 2020). Mapped on chromosome 11 (Chen //et al.//, 2020).
 +
 === Molecular markers === === Molecular markers ===
  
 //NA// //NA//
 +
 === Brief description === === Brief description ===
  
 //NA// //NA//
 +
 === Other resources === === Other resources ===
  
Line 1054: Line 1234:
  
 //NA// //NA//
 +
 === Source === === Source ===
  
 G252 rice line, a BC<sub>2</sub> F<sub>16</sub> generation material of the Yuanjiang common wild rice infiltration line (//Oryza rufipogon//) (Xing //et al.//, 2021; Lu //et al.//, 2022). G252 rice line, a BC<sub>2</sub> F<sub>16</sub> generation material of the Yuanjiang common wild rice infiltration line (//Oryza rufipogon//) (Xing //et al.//, 2021; Lu //et al.//, 2022).
 +
 === Status (identified, mapped, cloned, sequenced) === === Status (identified, mapped, cloned, sequenced) ===
  
 Identified and mapped on the long arm of chromosome 11 (Xing //et al.//, 2021). Cloned and sequenced (Lu //et al.//, 2022). Identified and mapped on the long arm of chromosome 11 (Xing //et al.//, 2021). Cloned and sequenced (Lu //et al.//, 2022).
 +
 === Molecular markers === === Molecular markers ===
  
 Available (Xing //et al.//, 2021; Lu //et al.//, 2022). Available (Xing //et al.//, 2021; Lu //et al.//, 2022).
 +
 === Brief description === === Brief description ===
  
Line 1078: Line 1262:
  
 //NA// //NA//
 +
 === Source === === Source ===
  
 IR 75084-15-3-B-B (Sinha //et al.//, 2023). IR 75084-15-3-B-B (Sinha //et al.//, 2023).
 +
 === Status (identified, mapped, cloned, sequenced) === === Status (identified, mapped, cloned, sequenced) ===
  
 Identified (Sinha //et al.//, 2021). Mapped on the long arm of chromosome 11, cloned and sequenced (Sinha //et al.//, 2023). Identified (Sinha //et al.//, 2021). Mapped on the long arm of chromosome 11, cloned and sequenced (Sinha //et al.//, 2023).
 +
 === Molecular markers === === Molecular markers ===
  
 Available, e.g., a PCR-based INDEL marker (Sinha //et al.//, 2023). Available, e.g., a PCR-based INDEL marker (Sinha //et al.//, 2023).
 +
 === Brief description === === Brief description ===
  
Line 1098: Line 1286:
  
 //NA// //NA//
 +
 === Source === === Source ===
  
 //Oryza rufipogon// acc. CR100098A (Bhatia //et al.//, 2025). //Oryza rufipogon// acc. CR100098A (Bhatia //et al.//, 2025).
 +
 === Status (identified, mapped, cloned, sequenced) === === Status (identified, mapped, cloned, sequenced) ===
  
 Mapped on chromosome 11 (Bhatia //et// //et al.//, 2025). Mapped on chromosome 11 (Bhatia //et// //et al.//, 2025).
 +
 === Molecular markers === === Molecular markers ===
  
 Available, e.g., KASP and SSR markers (Bhatia //et al.//, 2025). Available, e.g., KASP and SSR markers (Bhatia //et al.//, 2025).
 +
 === Brief description === === Brief description ===
  
Line 1120: Line 1312:
  
 //Os01g52130// (Cernadas //et al.//, 2014). //Os01g52130// (Cernadas //et al.//, 2014).
 +
 === Source === === Source ===
  
 Several cultivars of the indica group III subpopulation, such as ATT_CHHMOUS (IRIS_313-12142, acc. ERS469234), PAWNG_AEW_1 (IRIS_313-11508, acc. ERS468716), KHAO_SAHKORN (IRIS_313-11707, acc. ERS468944), and KYUN_TAW_SEIN (IRIS_313-11543, acc. ERS468742) (Shafique //et al.//, 2024). Several cultivars of the indica group III subpopulation, such as ATT_CHHMOUS (IRIS_313-12142, acc. ERS469234), PAWNG_AEW_1 (IRIS_313-11508, acc. ERS468716), KHAO_SAHKORN (IRIS_313-11707, acc. ERS468944), and KYUN_TAW_SEIN (IRIS_313-11543, acc. ERS468742) (Shafique //et al.//, 2024).
 +
 === Status (identified, mapped, cloned, sequenced) === === Status (identified, mapped, cloned, sequenced) ===
  
 Sequenced (Shafique //et al.//, 2024). Sequenced (Shafique //et al.//, 2024).
 +
 === Molecular markers === === Molecular markers ===
  
 InDel (Shafique //et al.//, 2024). InDel (Shafique //et al.//, 2024).
 +
 === Brief description === === Brief description ===
  
Line 1140: Line 1336:
  
 //Rba1//. //Rba1//.
 +
 === Source === === Source ===
  
 //NA// //NA//
 +
 === Status (identified, mapped, cloned, sequenced) === === Status (identified, mapped, cloned, sequenced) ===
  
 Mapped to short arm of maize chromosome 6 (Zhao //et al//., 2004a). Cloned and sequenced (Zhao //et al//., 2005). Mapped to short arm of maize chromosome 6 (Zhao //et al//., 2004a). Cloned and sequenced (Zhao //et al//., 2005).
 +
 === Molecular markers === === Molecular markers ===
  
 //NA// //NA//
 +
 === Brief description === === Brief description ===
  
Line 1160: Line 1360:
  
 //NA// //NA//
 +
 === Source === === Source ===
  
Line 1170: Line 1371:
  
 //NA// //NA//
 +
 === Brief description === === Brief description ===
  
Line 1181: Line 1383:
  
 //NA// //NA//
 +
 === Source === === Source ===
  
Line 1188: Line 1391:
  
 Mapped on chromosome 2 (Chen //et al.//, 2022). Mapped on chromosome 2 (Chen //et al.//, 2022).
 +
 === Molecular markers === === Molecular markers ===
  
 //NA// //NA//
 +
 === Brief description === === Brief description ===
  
Line 1207: Line 1412:
 Bao S, Tan M, Lin X (2010). Genetic mapping of a bacterial blight resistance gene //Xa14// in rice. Acta Agronomica Sin. 36: 422-427. Bao S, Tan M, Lin X (2010). Genetic mapping of a bacterial blight resistance gene //Xa14// in rice. Acta Agronomica Sin. 36: 422-427.
  
-Bhatia SK, Vikal Y, Kaur P, Dhillon GS, Kaur G, Neelam K, Malik P, Lore JS, Khanna R, Singh K (2025). Introgression and mapping of a novel bacterial blight resistance gene //xa49(t)// from //Oryza rufipogon// acc. CR100098A into //O. sativa//. Phytopathology, in press. DOI: [[https://doi.org/10.1094/PHYTO-02-24-0061-R|10.1094/PHYTO-02-24-0061-R]]+Bhatia SK, Vikal Y, Kaur P, Dhillon GS, Kaur G, Neelam K, Malik P, Lore JS, Khanna R, Singh K (2025). Introgression and mapping of a novel bacterial blight resistance gene //xa49(t)// from //Oryza rufipogon// acc. CR100098A into //O. sativa//. Phytopathology 
 + <font 11.0pt/inherit;;inherit;;inherit>114: 2412-2420</font>  . DOI: [[https://doi.org/10.1094/PHYTO-02-24-0061-R|10.1094/PHYTO-02-24-0061-R]]
  
 Busungu C, Taura S, Sakagami JI, Anai T, Ichitani K (2018). High-resolution mapping and characterization of //xa42//, a resistance gene against multiple //Xanthomonas oryzae// pv. //oryzae// races in rice (//Oryza sativa// L.). Breed. Sci. 68: 188-199. DOI: [[https://doi.org/10.1270/jsbbs.17094|10.1270/jsbbs.17094]] Busungu C, Taura S, Sakagami JI, Anai T, Ichitani K (2018). High-resolution mapping and characterization of //xa42//, a resistance gene against multiple //Xanthomonas oryzae// pv. //oryzae// races in rice (//Oryza sativa// L.). Breed. Sci. 68: 188-199. DOI: [[https://doi.org/10.1270/jsbbs.17094|10.1270/jsbbs.17094]]
Line 1470: Line 1676:
  
 Park CJ, Han SW, Chen X, Ronald PC (2010). Elucidation of XA21-mediated innate immunity. Cell. Microbiol. 12: 1017-1025. DOI: [[https://doi.org/10.1111/j.1462-5822.2010.01489.x|10.1111/j.1462-5822.2010.01489.x]] Park CJ, Han SW, Chen X, Ronald PC (2010). Elucidation of XA21-mediated innate immunity. Cell. Microbiol. 12: 1017-1025. DOI: [[https://doi.org/10.1111/j.1462-5822.2010.01489.x|10.1111/j.1462-5822.2010.01489.x]]
 +
 +Qi Y, Rao Q, Lu C, Gong J, Hou Y (2025). Recent progress in rice-//Xanthomonas oryzae// interactions. Biology (Basel) 14: 471. DOI: [[https://doi.org/10.3390/biology14050471|10.3390/biology14050471]]
  
 Sanya DRA, Syed-Ab-Rahman SF, Jia A, Onésime D, Kim KM, Ahohuendo BC, Rohr JR (2022). A review of approaches to control bacterial leaf blight in rice. World J. Microbiol. Biotechnol. 38: 113. DOI: [[https://doi.org/10.1007/s11274-022-03298-1|10.1007/s11274-022-03298-1]] Sanya DRA, Syed-Ab-Rahman SF, Jia A, Onésime D, Kim KM, Ahohuendo BC, Rohr JR (2022). A review of approaches to control bacterial leaf blight in rice. World J. Microbiol. Biotechnol. 38: 113. DOI: [[https://doi.org/10.1007/s11274-022-03298-1|10.1007/s11274-022-03298-1]]
plant/rice.1749130262.txt.gz · Last modified: 2025/06/05 14:31 by rkoebnik

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