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plant:rice [2024/11/25 13:40] – [Resistance gene: //Xa10//] rkoebnikplant:rice [2025/02/12 22:26] (current) – jfpothier
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 ====== Plant Resistance Genes in Rice (//Oryza// spp.) against //Xanthomonas// Infection ====== ====== Plant Resistance Genes in Rice (//Oryza// spp.) against //Xanthomonas// Infection ======
  
-Author: [[https://www.researchgate.net/profile/Ralf_Koebnik|Ralf Koebnik]]\\ +Author: [[https://www.researchgate.net/profile/Ralf_Koebnik|Ralf Koebnik]]
-Internal reviewer:\\ +
-Expert reviewer: **WANTED!**+
  
 **Additional information on rice resistance genes can be found at the [[https://shigen.nig.ac.jp/rice/oryzabase/|Oryzabase]] database (Kurata & Yamazaki, 2006).** **Additional information on rice resistance genes can be found at the [[https://shigen.nig.ac.jp/rice/oryzabase/|Oryzabase]] database (Kurata & Yamazaki, 2006).**
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 === Brief description === === Brief description ===
  
-NB-LRR class protein (Yoshimura //et al//., 1998). Cognate avirulence genes: TAL effector genes. Neutralized by interfering TAL effectors, so-called iTALEs or truncTALEs (Ji //et al.//, 2016; Read //et al.//, 2016).+NB-LRR class protein (Yoshimura //et al//., 1998). Cognate avirulence genes: TAL effector genes. Neutralized by interfering TAL effectors, so-called iTALEs or truncTALEs (Ji //et al//., 2016; Read //et al//., 2016).
 === Other resources === === Other resources ===
  
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 === Brief description === === Brief description ===
  
-Allelic to //Xa1// (Ji //et al.//, 2020). NB-LRR class protein (Ji //et al//., 2020). Cognate avirulence genes: TAL effector genes. Neutralized by interfering TAL effectors, so-called iTALEs or truncTALEs (Ji //et al.//, 2016; Read //et al.//, 2016).+Allelic to //Xa1// (Ji //et al//., 2020). NB-LRR class protein (Ji //et al//., 2020). Cognate avirulence genes: TAL effector genes. Neutralized by interfering TAL effectors, so-called iTALEs or truncTALEs (Ji //et al//., 2016; Read //et al//., 2016).
  
 ---- ----
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 === Brief description === === Brief description ===
  
-Allelic to //Xa6// (Ogawa //et al//., 1986b); allelic to //Xa26// (Xiang //et al//., 2006); NB-LRR class protein. Cognate avirulence gene: //avrXa3// (Li //et al.//, 2004).+Allelic to //Xa6// (Ogawa //et al//., 1986b); allelic to //Xa26// (Xiang //et al//., 2006); NB-LRR class protein. Cognate avirulence gene: //avrXa3// (Li //et al//., 2004).
 === Other resources === === Other resources ===
  
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 === Status (identified, mapped, cloned, sequenced) === === Status (identified, mapped, cloned, sequenced) ===
  
-Mapped on chromosome 11 (Wang //et al.//, 2001; Sun //et al.//, 2003). Cloned and sequenced (Hu //et al.//, 2017).+Mapped on chromosome 11 (Wang //et al//., 2001; Sun //et al//., 2003). Cloned and sequenced (Hu //et al//., 2017).
 === Molecular markers === === Molecular markers ===
  
-//NA//+RFLP marker (Yoshimura //et al//., 1995).
 === Brief description === === Brief description ===
  
-Wall-associated kinase (WAK) (Hu //et al.//, 2017).+Wall-associated kinase (WAK) (Hu //et al//., 2017).
 === Other resources === === Other resources ===
  
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 === Molecular markers === === Molecular markers ===
  
-//NA//+RFLP markers (Yoshimura //et al//., 1995).
 === Brief description === === Brief description ===
  
-TFIIAγ5 transcription factor (Iyer & McCouch, 2004; Jiang //et al.//, 2006). Direct interaction of several TALEs with TFIIAγ5 is required for activation of disease susceptibility genes (Yuan //et al.//, 2016). Suppression or mutation of TFIIAγ5 can also reduce bacterial streak, another disease of rice caused by TALE-carrying //Xanthomonas oryzae// pv. //oryzicola// (Yuan //et al.//, 2016). Cognate avirulence genes: //avrxa5//, //pthXo6//, //pthXo7// (Sugio //et al.//, 2007; Zou //et al.//, 2010).+TFIIAγ5 transcription factor (Iyer & McCouch, 2004; Jiang //et al//., 2006). Direct interaction of several TALEs with TFIIAγ5 is required for activation of disease susceptibility genes (Yuan //et al//., 2016). Suppression or mutation of TFIIAγ5 can also reduce bacterial streak, another disease of rice caused by TALE-carrying //Xanthomonas oryzae// pv. //oryzicola// (Yuan //et al//., 2016). Cognate avirulence genes: //avrxa5//, //pthXo6//, //pthXo7// (Sugio //et al//., 2007; Zou //et al//., 2010).
 === Other resources === === Other resources ===
  
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 === Status (identified, mapped, cloned, sequenced) === === Status (identified, mapped, cloned, sequenced) ===
  
-Mapped on chromosome 11 (Sidhu //et al.//, 1978).+Mapped on chromosome 11 (Sidhu //et al//., 1978).
 === Molecular markers === === Molecular markers ===
  
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 === Status (identified, mapped, cloned, sequenced) === === Status (identified, mapped, cloned, sequenced) ===
  
-Identified (Sidhu //et al.//, 1978). Mapped on chromosome 6 (Lee & Khush, 2000; Porter //et al.//, 2003). Cloned & sequenced (Chen //et al.//, 2021; Luo //et al.//, 2021).+Identified (Sidhu //et al//., 1978). Mapped on chromosome 6 (Lee & Khush, 2000; Porter //et al//., 2003). Cloned & sequenced (Chen //et al//., 2021; Luo //et al//., 2021).
 === Molecular markers === === Molecular markers ===
  
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 === Brief description === === Brief description ===
  
-Cognate avirulence genes: //avrXa7//, //pthXo3// (Hopkins //et al.//, 1992; Yang //et al.//, 2000; Yang & White, 2004). The transcription activator-like effector (TALE) AvrXa7 in //Xoo// strains binds directly to the effector-binding element (EBE) in the promoter of the //Xa7// gene (He //et al.//, 2024). Other executor //R// genes (//Xa10//, //Xa23//, and //Xa27//) driven by the promoter of the //Xa7// gene could be activated by AvrXa7 and trigger the hypersensitive response (HR) in tobacco leaves (He //et al.//, 2024).+Cognate avirulence genes: //avrXa7//, //pthXo3// (Hopkins //et al//., 1992; Yang //et al//., 2000; Yang & White, 2004). The transcription activator-like effector (TALE) AvrXa7 in //Xoo// strains binds directly to the effector-binding element (EBE) in the promoter of the //Xa7// gene (He //et al//., 2024). Other executor //R// genes (//Xa10//, //Xa23//, and //Xa27//) driven by the promoter of the //Xa7// gene could be activated by AvrXa7 and trigger the hypersensitive response (HR) in tobacco leaves (He //et al//., 2024).
  
 ---- ----
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 === Status (identified, mapped, cloned, sequenced) === === Status (identified, mapped, cloned, sequenced) ===
  
-Identified (Sidhu //et al.//, 1978). Mapped on chromosome 7 (Singh //et al.//, 2002).+Identified (Sidhu //et al//., 1978). Mapped on chromosome 7 (Singh //et al//., 2002).
 === Molecular markers === === Molecular markers ===
  
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 === Status (identified, mapped, cloned, sequenced) === === Status (identified, mapped, cloned, sequenced) ===
  
-Mapped on chromosome 11 (Singh //et al.//, 1983; Ogawa //et al.//, 1988).+Mapped on chromosome 11 (Singh //et al//., 1983; Ogawa //et al//., 1988).
 === Molecular markers === === Molecular markers ===
  
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 === Source === === Source ===
  
-Rice accession Cas 209 from Senegal. Xa10-like genes in rice cultivar Nipponbare (Wang //et al.//, 2017).+Rice accession Cas 209 from Senegal. Xa10-like genes in rice cultivar Nipponbare (Wang //et al//., 2017).
 === Status (identified, mapped, cloned, sequenced) === === Status (identified, mapped, cloned, sequenced) ===
  
-Mapped on chromosome 11 (Yoshimura //et al.//, 1983). Cloned and sequenced (Tian //et al.//, 2014).+Mapped on chromosome 11 (Yoshimura //et al//., 1983). Cloned and sequenced (Tian //et al//., 2014).
 === Molecular markers === === Molecular markers ===
  
-//NA//+RAPD marker (Yoshimura //et al//., 1995).
 === Brief description === === Brief description ===
  
-The TAL effector-dependent resistance protein XA10 triggers cell death and calcium depletion in the endoplasmic reticulum (Tian //et al.//, 2014). The predicted membrane protein shares 50% sequence identity with the executor R protein XA23 (Wang //et al.//, 2015). Induction of //Xa10//-like genes in the rice cultivar Nipponbare confers disease resistance to bacterial blight (Wang //et al.//, 2017). Cognate avirulence gene: //avrXa10//.+The TAL effector-dependent resistance protein XA10 triggers cell death and calcium depletion in the endoplasmic reticulum (Tian //et al//., 2014). The predicted membrane protein shares 50% sequence identity with the executor R protein XA23 (Wang //et al//., 2015). Induction of //Xa10//-like genes in the rice cultivar Nipponbare confers disease resistance to bacterial blight (Wang //et al//., 2017). Cognate avirulence gene: //avrXa10//.
 === Other resources === === Other resources ===
  
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 === Status (identified, mapped, cloned, sequenced) === === Status (identified, mapped, cloned, sequenced) ===
  
-Mapped on chromosome 8 (Chu //et al.//, 2006). Cloned and sequenced (Yang //et al.//, 2006; Yuan //et al.//, 2009).+Mapped on chromosome 8 (Chu //et al.//, 2006). Cloned and sequenced (Yang //et al//., 2006; Yuan //et al//., 2009).
 === Molecular markers === === Molecular markers ===
  
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 === Brief description === === Brief description ===
  
-SWEET-type protein. The XA13 protein may cooperate with two other proteins, COPT1 and COPT5, to promote removal of copper from xylem vessels (Yuan //et al.//, 2010). Cognate avirulence gene: //pthXo1// (Yang //et al.//, 2006).+SWEET-type protein. The XA13 protein may cooperate with two other proteins, COPT1 and COPT5, to promote removal of copper from xylem vessels (Yuan //et al//., 2010). Cognate avirulence gene: //pthXo1// (Yang //et al//., 2006).
  
 ---- ----
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 === Status (identified, mapped, cloned, sequenced) === === Status (identified, mapped, cloned, sequenced) ===
  
-Mapped on chromosome 4 (Bao //et al.//, 2010). Cloned and sequenced (Ji //et al//., 2020).+Mapped on chromosome 4 (Bao //et al//., 2010). Cloned and sequenced (Ji //et al//., 2020).
 === Molecular markers === === Molecular markers ===
  
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 === Brief description === === Brief description ===
  
-Allelic to //Xa1// (Ji //et al.//, 2020). NB-LRR class protein (Ji //et al//., 2020). Cognate avirulence genes: TAL effector genes. Neutralized by interfering TAL effectors, so-called iTALEs or truncTALEs (Ji //et al.//, 2016; Read //et al.//, 2016).+Allelic to //Xa1// (Ji //et al//., 2020). NB-LRR class protein (Ji //et al//., 2020). Cognate avirulence genes: TAL effector genes. Neutralized by interfering TAL effectors, so-called iTALEs or truncTALEs (Ji //et al//., 2016; Read //et al//., 2016).
  
 ---- ----
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 === Status (identified, mapped, cloned, sequenced) === === Status (identified, mapped, cloned, sequenced) ===
  
-//NA// (Nakai //et al.//, 1988; Gnanamanickam //et al.//, 1999).+Identified (Nakai //et al//., 1988; Gnanamanickam //et al//., 1999).
 === Molecular markers === === Molecular markers ===
  
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 === Status (identified, mapped, cloned, sequenced) === === Status (identified, mapped, cloned, sequenced) ===
  
-Mapped on chromosome 4 (Endo //et al.//, 2009, 2012).+Mapped on chromosome 4 (Endo //et al//., 2009, 2012).
 === Molecular markers === === Molecular markers ===
  
-Ph phenol reaction, which turns rice seeds soaked in phenol solution dark brown; blast resistance gene //Pias(t)//; DNA markers (Ise //et al.//, 1998; Endo //et al.//, 2009, 2012).+Ph phenol reaction, which turns rice seeds soaked in phenol solution dark brown; blast resistance gene //Pias(t)//; DNA markers (Ise //et al//., 1998; Endo //et al//., 2009, 2012).
 === Brief description === === Brief description ===
  
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 === Status (identified, mapped, cloned, sequenced) === === Status (identified, mapped, cloned, sequenced) ===
  
-Identified (Liu //et al.//, 2004; Kurata & Yamazaki, 2006)+Identified (Liu //et al//., 2004; Kurata & Yamazaki, 2006)
 === Molecular markers === === Molecular markers ===
  
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 === Status (identified, mapped, cloned, sequenced) === === Status (identified, mapped, cloned, sequenced) ===
  
-Identified (Taura //et al.//, 1991).+Identified (Taura //et al//., 1991). Mapped on chromosome 7 (Taura & Ichitani, 2023).
 === Molecular markers === === Molecular markers ===
  
-//NA//+SSR markers (Taura & Ichitani, 2023). 
 === Brief description === === Brief description ===
  
-//NA//+The chromosomal location suggests that //xa19// might be allelic to a lesion-mimic mutant gene //spl5//, some alleles of which are resistant to several //Xoo// races (Taura & Ichitani, 2023).
  
 ---- ----
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 === Status (identified, mapped, cloned, sequenced) === === Status (identified, mapped, cloned, sequenced) ===
  
-Identified (Taura //et al.//, 1992).+Identified (Taura //et al//., 1992).
 === Molecular markers === === Molecular markers ===
  
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 === Status (identified, mapped, cloned, sequenced) === === Status (identified, mapped, cloned, sequenced) ===
  
-Mapped on chromosome 11 (Ronald //et al.//, 1992). Cloned and sequenced (Song //et al.//, 1995).+Mapped on chromosome 11 (Ronald //et al//., 1992). Cloned and sequenced (Song //et al//., 1995).
 === Molecular markers === === Molecular markers ===
  
-RAPD and RFLP markers (Ronald //et al.//, 1992). Intragenic AFLP marker (Nanayakkara //et al.//, 2020).+RAPD and RFLP markers (Ronald //et al//., 1992). Intragenic AFLP marker (Nanayakkara //et al//., 2020).
 === Brief description === === Brief description ===
  
-Cognate avirulence gene: //raxX// (Pruitt //et al.//, 2015).+Cognate avirulence gene: //raxX// (Pruitt //et al//., 2015).
 === Other resources === === Other resources ===
  
-[[https://funricegenes.github.io/xa21/|FunRiceGenes]].+[[https://funricegenes.github.io/LOC_Os11g35500/|FunRiceGenes]].
  
 ---- ----
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 === Status (identified, mapped, cloned, sequenced) === === Status (identified, mapped, cloned, sequenced) ===
  
-Identified (Lin //et al.//, 1996). Mapped on chromosome 11 (Lin //et al.//, 1996; Wang //et al.//, 2003; Sun //et al.//, 2004).+Identified (Lin //et al//., 1996). Mapped on chromosome 11 (Lin //et al//., 1996; Wang //et al//., 2003; Sun //et al//., 2004).
 === Molecular markers === === Molecular markers ===
  
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 === Status (identified, mapped, cloned, sequenced) === === Status (identified, mapped, cloned, sequenced) ===
  
-Identified (Zhang //et al.//, 1994). Mapped on chromosome 11 (Zhang //et al.//, 1998; Zhang //et al.//, 2001). Cloned and sequenced (Wang //et al.//, 2015).+Identified (Zhang //et al.//, 1994). Mapped on chromosome 11 (Zhang //et al//., 1998; Zhang //et al//., 2001). Cloned and sequenced (Wang //et al//., 2015).
 === Molecular markers === === Molecular markers ===
  
-SSR markers (Zhang //et al.//, 1998).+SSR markers (Zhang //et al//., 1998).
 === Brief description === === Brief description ===
  
-113-amino acid protein that shares 50% sequence identity with the executor R protein XA10 (Wang //et al.//, 2015). Cognate avirulence gene: //avrXa23//.+113-amino acid protein that shares 50% sequence identity with the executor R protein XA10 (Wang //et al//., 2015). Cognate avirulence gene: //avrXa23//.
 === Other resources === === Other resources ===
  
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 === Source === === Source ===
  
-//Indica// rice cultivar Minghui (Chen //et al.//, 2002) and its somaclonal mutant HX-3 (Gao //et al.//, 2001; Gao & Sun, 2003) from China.+//Indica// rice cultivar Minghui (Chen //et al//., 2002) and its somaclonal mutant HX-3 (Gao //et al//., 2001; Gao & Sun, 2003) from China.
 === Status (identified, mapped, cloned, sequenced) === === Status (identified, mapped, cloned, sequenced) ===
  
-Identified (Gao //et al.//, 2001; Chen //et al.//, 2002). Mapped on centromeric region of chromosome 12 (Chen //et al.//, 2002; Liu //et al.//, 2011). Cloned and sequenced (Liu //et al.//, 2011).+Identified (Gao //et al//., 2001; Chen //et al//., 2002). Mapped on centromeric region of chromosome 12 (Chen //et al//., 2002; Liu //et al//., 2011). Cloned and sequenced (Liu //et al//., 2011).
 === Molecular markers === === Molecular markers ===
  
-RFLP markers (Chen //et al.//, 2002).+RFLP markers (Chen //et al//., 2002).
 === Brief description === === Brief description ===
  
-SWEET-type protein (Liu //et al.//, 2011). Phenomenon of dominance reversal; heterozygous plants are susceptible at an early developmental stage but resistant at a late developmental stage (Liu //et al.//, 2011). Cognate avirulence gene: //pthXo2// (Zhou //et al.//, 2015).+SWEET-type protein (Liu //et al//., 2011). Phenomenon of dominance reversal; heterozygous plants are susceptible at an early developmental stage but resistant at a late developmental stage (Liu //et al//., 2011). Cognate avirulence gene: //pthXo2// (Zhou //et al//., 2015).
 === Other resources === === Other resources ===
  
-[[https://funricegenes.github.io/Xa25~OsSWEET13/|FunRiceGenes]].+[[https://funricegenes.github.io/LOC_Os12g29220/|FunRiceGenes]].
  
 ---- ----
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 === Status (identified, mapped, cloned, sequenced) === === Status (identified, mapped, cloned, sequenced) ===
  
-Mapped on the terminal region of the long arm of chromosome 11 (Yang //et al.//, 2003). Cloned and sequenced (Sun //et al.//, 2004).+Mapped on the terminal region of the long arm of chromosome 11 (Yang //et al//., 2003). Cloned and sequenced (Sun //et al//., 2004).
 === Molecular markers === === Molecular markers ===
  
-RFLP and SSR markers (Yang //et al.//, 2003).+RFLP and SSR markers (Yang //et al//., 2003).
 === Brief description === === Brief description ===
  
-NB-LRR class protein (Sun //et al.//, 2004).+NB-LRR class protein (Sun //et al//., 2004).
 === Other resources === === Other resources ===
  
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 === Status (identified, mapped, cloned, sequenced) === === Status (identified, mapped, cloned, sequenced) ===
  
-Identified (Lee //et al.//, 2003).+Identified (Lee //et al//., 2003).
 === Molecular markers === === Molecular markers ===
  
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 === Status (identified, mapped, cloned, sequenced) === === Status (identified, mapped, cloned, sequenced) ===
  
-Identified (Lee //et al.//, 2003).+Identified (Lee //et al//., 2003).
 === Molecular markers === === Molecular markers ===
  
Line 624: Line 623:
 === Status (identified, mapped, cloned, sequenced) === === Status (identified, mapped, cloned, sequenced) ===
  
-Identified (Amante-Bordeos //et al.//, 1992). Mapped on the long arm of chromosome 6 (Gu //et al.//, 2004). Cloned and sequenced (Gu //et al.//, 2005).+Identified (Amante-Bordeos //et al//., 1992). Mapped on the long arm of chromosome 6 (Gu //et al//., 2004). Cloned and sequenced (Gu //et al//., 2005).
 === Molecular markers === === Molecular markers ===
  
-AFLP, RAPD and RFLP markers (Gu //et al.//, 2004).+AFLP, RAPD and RFLP markers (Gu //et al//., 2004).
 === Brief description === === Brief description ===
  
-Cognate avirulence gene: //avrXa27// (Gu //et al.//, 2005).+Cognate avirulence gene: //avrXa27// (Gu //et al//., 2005).
 === Other resources === === Other resources ===
  
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 === Status (identified, mapped, cloned, sequenced) === === Status (identified, mapped, cloned, sequenced) ===
  
-Identified (Lee //et al.//, 2003).+Identified (Lee //et al//., 2003).
 === Molecular markers === === Molecular markers ===
  
Line 668: Line 667:
 === Status (identified, mapped, cloned, sequenced) === === Status (identified, mapped, cloned, sequenced) ===
  
-Mapped on chromosome 1 (Tan //et al.//, 2004).+Mapped on chromosome 1 (Tan //et al//., 2004).
 === Molecular markers === === Molecular markers ===
  
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 === Status (identified, mapped, cloned, sequenced) === === Status (identified, mapped, cloned, sequenced) ===
  
-Mapped on chromosome 11 (Tan //et al.//, 2004).+Mapped on chromosome 11 (Tan //et al//., 2004).
 === Molecular markers === === Molecular markers ===
  
Line 708: Line 707:
 === Status (identified, mapped, cloned, sequenced) === === Status (identified, mapped, cloned, sequenced) ===
  
-Identified and mapped on chromosome 4 (Wang //et al.//, 2009). Cloned and sequenced (Ji //et al//., 2020).+Identified and mapped on chromosome 4 (Wang //et al//., 2009). Cloned and sequenced (Ji //et al//., 2020).
 === Molecular markers === === Molecular markers ===
  
-//NA//+RFLP markers (Wang //et al//., 2009)
 === Brief description === === Brief description ===
  
-Identical to //Xa2// and allelic to //Xa1// (Ji //et al.//, 2020). NB-LRR class protein (Ji //et al//., 2020). Cognate avirulence genes: TAL effector genes. Neutralized by interfering TAL effectors, so-called iTALEs or truncTALEs (Ji //et al.//, 2016; Read //et al.//, 2016).+Identical to //Xa2// and allelic to //Xa1// (Ji //et al//., 2020). NB-LRR class protein (Ji //et al//., 2020). Cognate avirulence genes: TAL effector genes. Neutralized by interfering TAL effectors, so-called iTALEs or truncTALEs (Ji //et al.//, 2016; Read //et al//., 2016).
  
 ---- ----
Line 728: Line 727:
 === Status (identified, mapped, cloned, sequenced) === === Status (identified, mapped, cloned, sequenced) ===
  
-Identified and mapped on the long arm of chromosome 11 (Zheng //et al.//, 2009).+Identified and mapped on the long arm of chromosome 11 (Zheng //et al//., 2009).
 === Molecular markers === === Molecular markers ===
  
-SSR and EST markers (Zheng //et al.//, 2009).+SSR and EST markers (Zheng //et al//., 2009).
 === Brief description === === Brief description ===
  
Line 748: Line 747:
 === Status (identified, mapped, cloned, sequenced) === === Status (identified, mapped, cloned, sequenced) ===
  
-Mapped on the long arm of chromosome 6 (Korinsak //et al.//, 2009; Natraj Kumar //et al.//, 2012).+Mapped on the long arm of chromosome 6 (Korinsak //et al//., 2009; Natraj Kumar //et al//., 2012).
 === Molecular markers === === Molecular markers ===
  
-SSR markers (Korinsak //et al.//, 2009).+SSR markers (Korinsak //et al//., 2009).
 === Brief description === === Brief description ===
  
Line 768: Line 767:
 === Status (identified, mapped, cloned, sequenced) === === Status (identified, mapped, cloned, sequenced) ===
  
-Identified (Ram //et al.//, 2010).+Identified (Ram //et al//., 2010).
 === Molecular markers === === Molecular markers ===
  
Line 788: Line 787:
 === Status (identified, mapped, cloned, sequenced) === === Status (identified, mapped, cloned, sequenced) ===
  
-Mapped on chromosome 11 (Guo //et al.//, 2010).+Mapped on chromosome 11 (Guo //et al//., 2010).
 === Molecular markers === === Molecular markers ===
  
Line 809: Line 808:
 === Status (identified, mapped, cloned, sequenced) === === Status (identified, mapped, cloned, sequenced) ===
  
-Mapped on chromosome 11 (Miao //et al.//, 2010).+Mapped on chromosome 11 (Miao //et al//., 2010).
 === Molecular markers === === Molecular markers ===
  
Line 850: Line 849:
 === Status (identified, mapped, cloned, sequenced) === === Status (identified, mapped, cloned, sequenced) ===
  
-Identified (Kaur //et al.//, 2006). Mapped on long arm of chromosome 4 (Cheema //et al.//, 2008).+Identified (Kaur //et al//., 2006). Mapped on long arm of chromosome 4 (Cheema //et al//., 2008).
 === Molecular markers === === Molecular markers ===
  
-SSR markers (Cheema //et al.//, 2008).+SSR markers (Cheema //et al//., 2008).
 === Brief description === === Brief description ===
  
Line 871: Line 870:
 === Status (identified, mapped, cloned, sequenced) === === Status (identified, mapped, cloned, sequenced) ===
  
-Mapped on chromosome 11 (Zhang //et al.//, 2014).+Mapped on chromosome 11 (Zhang //et al//., 2014).
 === Molecular markers === === Molecular markers ===
  
Line 892: Line 891:
 === Status (identified, mapped, cloned, sequenced) === === Status (identified, mapped, cloned, sequenced) ===
  
-Mapped on chromosome 11 (Kim //et al.//, 2015).+Mapped on chromosome 11 (Kim //et al//., 2015).
 === Molecular markers === === Molecular markers ===
  
Line 912: Line 911:
 === Status (identified, mapped, cloned, sequenced) === === Status (identified, mapped, cloned, sequenced) ===
  
-Cloned and sequenced (Hutin //et al.//, 2015).+Cloned and sequenced (Hutin //et al//., 2015).
 === Molecular markers === === Molecular markers ===
  
-Intragenic AFLP marker (Hutin //et al.//, 2015).+Intragenic AFLP marker (Hutin //et al//., 2015).
 === Brief description === === Brief description ===
  
-SWEET-type protein. Cognate avirulence genes: //pthXo3//, //avrXa7//, //talC//, //tal5// (Antony //et al.//, 2010; Yu //et al.//, 2011; Streubel et al., 2013).+SWEET-type protein. Cognate avirulence genes: //pthXo3//, //avrXa7//, //talC//, //tal5// (Antony //et al//., 2010; Yu //et al//., 2011; Streubel //et al//., 2013).
  
 ---- ----
Line 933: Line 932:
 === Status (identified, mapped, cloned, sequenced) === === Status (identified, mapped, cloned, sequenced) ===
  
-Mapped on chromosome 3 (Busungu //et al.//, 2016, 2018; Lian //et al.//, 2017).+Mapped on chromosome 3 (Busungu //et al//., 2016, 2018; Lian //et al//., 2017).
 === Molecular markers === === Molecular markers ===
  
Line 975: Line 974:
 === Status (identified, mapped, cloned, sequenced) === === Status (identified, mapped, cloned, sequenced) ===
  
-Mapped on chromosome 11 (Huang //et al.//, 2023).+Mapped on chromosome 11 (Huang //et al//., 2023).
 === Molecular markers === === Molecular markers ===
  
-Inde1-18 (Huang //et al.//, 2023).+Inde1-18 (Huang //et al//., 2023).
 === Brief description === === Brief description ===
  
Line 1046: Line 1045:
 === Other resources === === Other resources ===
  
-[[https://funricegenes.github.io/Xa46(t)/|FunRiceGenes]].+[[https://funricegenes.github.io/LOC_Os11g37540/|FunRiceGenes]].
  
 ---- ----
Line 1070: Line 1069:
 === Other resources === === Other resources ===
  
-[[https://funricegenes.github.io/Xa47/|FunRiceGenes]].+[[https://funricegenes.github.io/LOC_Os11g46200/|FunRiceGenes]].
  
 ---- ----
Line 1146: Line 1145:
 === Status (identified, mapped, cloned, sequenced) === === Status (identified, mapped, cloned, sequenced) ===
  
-Mapped to short arm of maize chromosome 6 (Zhao //et al.//, 2004a). Cloned and sequenced (Zhao //et al.//, 2005).+Mapped to short arm of maize chromosome 6 (Zhao //et al//., 2004a). Cloned and sequenced (Zhao //et al//., 2005).
 === Molecular markers === === Molecular markers ===
  
Line 1152: Line 1151:
 === Brief description === === Brief description ===
  
-NB-LRR class protein. Example of how nonhost resistance gene transfer between cereals - from maize to rice - provides resistance against bacterial streak disease (Zhao //et al.//, 2005). Cognate avirulence gene: //avrRxo1// (Zhao //et al.//, 2004b).+NB-LRR class protein. Example of how nonhost resistance gene transfer between cereals - from maize to rice - provides resistance against bacterial streak disease (Zhao //et al//., 2005). Cognate avirulence gene: //avrRxo1// (Zhao //et al//., 2004b).
  
 ---- ----
Line 1167: Line 1166:
 === Status (identified, mapped, cloned, sequenced) === === Status (identified, mapped, cloned, sequenced) ===
  
-Mapped on the long arm of chromosome 4 (Triplett //et al.//, 2016). Cloned (Read //et al.//, 2020).+Mapped on the long arm of chromosome 4 (Triplett //et al//., 2016). Cloned (Read //et al//., 2020).
 === Molecular markers === === Molecular markers ===
  
Line 1200: Line 1199:
 ===== References ===== ===== References =====
  
-Amante-Bordeos A, Sitch LA, Nelson R, Dalmacio RD, Oliva NP, Aswidinnoor H, Leung H (1992). Transfer of bacterial blight and blast resistance from the tetraploid wild rice //Oryza minuta// to cultivated rice, //Oryza sativa//.Theor. Appl. Genet. 84: 345-354. DOI: [[https://doi.org/10.1007/BF00229493|10.1007/BF00229493]]+Amante-Bordeos A, Sitch LA, Nelson R, Dalmacio RD, Oliva NP, Aswidinnoor H, Leung H (1992). Transfer of bacterial blight and blast resistance from the tetraploid wild rice //Oryza minuta// to cultivated rice, //Oryza sativa//. Theor. Appl. Genet. 84: 345-354. DOI: [[https://doi.org/10.1007/BF00229493|10.1007/BF00229493]]
  
 Antony G, Zhou J, Huang S, Li T, Liu B, White F, Yang B (2010). Rice //xa13// recessive resistance to bacterial blight is defeated by induction of the disease susceptibility gene //Os-11N3//. Plant Cell 22: 3864-3876. DOI: [[https://doi.org/10.1105/tpc.110.078964|10.1105/tpc.110.078964]] Antony G, Zhou J, Huang S, Li T, Liu B, White F, Yang B (2010). Rice //xa13// recessive resistance to bacterial blight is defeated by induction of the disease susceptibility gene //Os-11N3//. Plant Cell 22: 3864-3876. DOI: [[https://doi.org/10.1105/tpc.110.078964|10.1105/tpc.110.078964]]
Line 1254: Line 1253:
 Hu K, Cao J, Zhang J, Xia F, Ke Y, Zhang H, Xie W, Liu H, Cui Y, Cao Y, Sun X, Xiao J, Li X, Zhang Q, Wang S (2017). Improvement of multiple agronomic traits by a disease resistance gene via cell wall reinforcement. Nat. Plants 3: 17009. DOI: [[https://doi.org/10.1038/nplants.2017.9|10.1038/nplants.2017.9]] Hu K, Cao J, Zhang J, Xia F, Ke Y, Zhang H, Xie W, Liu H, Cui Y, Cao Y, Sun X, Xiao J, Li X, Zhang Q, Wang S (2017). Improvement of multiple agronomic traits by a disease resistance gene via cell wall reinforcement. Nat. Plants 3: 17009. DOI: [[https://doi.org/10.1038/nplants.2017.9|10.1038/nplants.2017.9]]
  
-Huang F, He N, Yu M, Li D, Yang D (2023). Identification and fine-mapping of a new bacterial blight resistance gene, //Xa43(t)//, in Zhangpu wild rice (//Oryza rufipogon//). Plant Biol. (Stuttg), +Huang F, He N, Yu M, Li D, Yang D (2023). Identification and fine-mapping of a new bacterial blight resistance gene, //Xa43(t)//, in Zhangpu wild rice (//Oryza rufipogon//). Plant Biol. (Stuttg), in press . DOI: [[https://doi.org/10.1111/plb.13502|10.1111/plb.13502]]
- <font inherit/inherit;;#c0392b;;inherit>in press</font>  . DOI: [[https://doi.org/10.1111/plb.13502|10.1111/plb.13502]]+
  
 Hummer AW, Wilkins KE, Wang L, Cernadas RA, Bogdanove AJ (2017). A transcription activator-like effector from //Xanthomonas oryzae// pv. //oryzicola// elicits dose-dependent resistance in rice. Mol. Plant Pathol. 18: 55-66. DOI: [[https://doi.org/10.1111/mpp.12377|10.1111/mpp.12377]] Hummer AW, Wilkins KE, Wang L, Cernadas RA, Bogdanove AJ (2017). A transcription activator-like effector from //Xanthomonas oryzae// pv. //oryzicola// elicits dose-dependent resistance in rice. Mol. Plant Pathol. 18: 55-66. DOI: [[https://doi.org/10.1111/mpp.12377|10.1111/mpp.12377]]
Line 1333: Line 1331:
 Read AC, Rinaldi FC, Hutin M, He YQ, Triplett LR, Bogdanove AJ (2016). Suppression of //Xo1//-mediated disease resistance in rice by a truncated, non-DNA-binding TAL effector of //Xanthomonas oryzae//. Front. Plant Sci. 7: 1516. DOI: [[https://doi.org/10.3389/fpls.2016.01516|10.3389/fpls.2016.01516]] Read AC, Rinaldi FC, Hutin M, He YQ, Triplett LR, Bogdanove AJ (2016). Suppression of //Xo1//-mediated disease resistance in rice by a truncated, non-DNA-binding TAL effector of //Xanthomonas oryzae//. Front. Plant Sci. 7: 1516. DOI: [[https://doi.org/10.3389/fpls.2016.01516|10.3389/fpls.2016.01516]]
  
-Read AC, Hutin M, Moscou MJ, Rinaldi FC, Bogdanove AJ (2020). Cloning of the rice //Xo1 //resistance gene and interaction of the Xo1 protein with the defense-suppressing //Xanthomonas// effector Tal2h. Mol. Plant Microbe Interact. 33: 1189-1195 . DOI: [[https://doi.org/10.1094/MPMI-05-20-0131-SC|10.1094/MPMI-05-20-0131-SC]]+Read AC, Hutin M, Moscou MJ, Rinaldi FC, Bogdanove AJ (2020). Cloning of the rice //Xo1// resistance gene and interaction of the Xo1 protein with the defense-suppressing //Xanthomonas// effector Tal2h. Mol. Plant Microbe Interact. 33: 1189-1195 . DOI: [[https://doi.org/10.1094/MPMI-05-20-0131-SC|10.1094/MPMI-05-20-0131-SC]]
  
 Ronald PC, Albano B, Tabien R, Abenes L, Wu KS, McCouch S, Tanksley SD (1992). Genetic and physical analysis of the rice bacterial blight disease resistance locus, //Xa21//. Mol. Gen. Genet. 236: 113-120. DOI: [[https://doi.org/10.1007/BF00279649|10.1007/BF00279649]] Ronald PC, Albano B, Tabien R, Abenes L, Wu KS, McCouch S, Tanksley SD (1992). Genetic and physical analysis of the rice bacterial blight disease resistance locus, //Xa21//. Mol. Gen. Genet. 236: 113-120. DOI: [[https://doi.org/10.1007/BF00279649|10.1007/BF00279649]]
Line 1362: Line 1360:
  
 Tan GX, Ren X, Weng QM, Shi ZY, Zhu LL, He GC (2004). Mapping of a new resistance gene to bacterial blight in rice line introgressed from //Oryza officinalis//. Acta Genet. Sin. 31: 724-729. Tan GX, Ren X, Weng QM, Shi ZY, Zhu LL, He GC (2004). Mapping of a new resistance gene to bacterial blight in rice line introgressed from //Oryza officinalis//. Acta Genet. Sin. 31: 724-729.
 +
 +Taura S, Ichitani K (2023). Chromosomal location of //xa19//, a broad-spectrum rice bacterial blight resistant gene from XM5, a mutant line from IR24. Plants (Basel) 12: 602. DOI: [[https://doi.org/10.3390/plants12030602|10.3390/plants12030602]]
  
 Taura S, Ogawa T, Yoshimura A, Ikea R, Omura T (1991). Identification of a recessive resistance gene in induced mutant line XM5 of rice to rice bacterial blight. Japan. J. Breed. 41: 427-432. DOI: [[https://doi.org/10.1270/jsbbs1951.41.427|10.1270/jsbbs1951.41.427]] Taura S, Ogawa T, Yoshimura A, Ikea R, Omura T (1991). Identification of a recessive resistance gene in induced mutant line XM5 of rice to rice bacterial blight. Japan. J. Breed. 41: 427-432. DOI: [[https://doi.org/10.1270/jsbbs1951.41.427|10.1270/jsbbs1951.41.427]]
plant/rice.1732542047.txt.gz · Last modified: 2024/11/25 13:40 by rkoebnik

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