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====== Type III effectors ======

[[http://www.biopred.net/xanthomonas/|Link to the original Xanthomonas //Resource @ xanthomonas.org]]

[[:bacteria:t3e:effectors|Multi-FASTA-formatted list of type III effectors from Xanthomonas]]

[[https://www.ncbi.nlm.nih.gov/protein/WP_011037255.1, WP_039418336.1, WP_011052943.1, WP_039417318.1, WP_011347616.1, WP_041183113.1, WP_228949438.1, WP_011345998.1, WP_011347479.1, WP_011052114.1, WP_244170787.1, WP_260607984.1, WP_011346095.1, WP_011348008.1, WP_039005675.1, WP_011346758.1, WP_011038360.1, WP_084217840.1, WP_011345706.1, WP_010377341.1, WP_011346406.1, WP_010367684.1, WP_011347382.1, WP_074052319.1, WP_011346137.1, WP_008572727.1, WP_228442257.1, WP_196765268.1, WP_027703763.1, WP_218498620.1, WP_011346113.1, WP_011348010.1, WP_011346566.1, WP_104613784.1, WP_011349176.1, WP_011260681.1, WP_039418869.1, WP_199285673.1, WP_011408937.1, WP_011409498.1, WP_228329674.1, WP_011346212.1, WP_011408080.1, WP_011259177.1, WP_039421390.1, WP_041855088.1, WP_011409110.1, WP_011269629.1, WP_011409710.1, WP_011050288.1, WP_008577605.1, WP_227479740.1, WP_272820829.1, WP_007970248.1, WP_011037263.1, WP_011052119.1, WP_014504815.1, WP_269466020.1, WP_274360846.1, WP_012437264.1, WP_012438997.1, WP_162267513.1, WP_236504155.1, WP_233366621.1, APO95022.1, WP_229015407.1, AEL06363.1, WP_041855031.1, WP_065628638.1, WP_011269951.1, WP_011348129.1, WP_041854960.1, WP_104549896.1, WP_227478587.1, WP_251761698.1, WP_145953988.1?report=fasta|List of type III effectors in Xanthomonas]] (for download from NCBI)

[[http://www.pseudomonas-syringae.org|Pseudomonas–Plant Interaction website]] (Lindeberg //et al.//, 2005)

[[https://iant.toulouse.inra.fr/T3E|RalstoT3Edb]] (Peeters //et al.//, 2013; Sabbagh //et al.//, 2019)

[[:bacteria:t3e:effector_reviews|Review papers on type III effectors]]

[[:bacteria:t3e:software|Software, databases and websites for type III effectors]]

[[:bacteria:t3e:t3e_template|Empty template]] - [[:bacteria:t3e:xopau|Example 1: XopAU]] - [[:bacteria:t3e:xopb|Example 2: XopB]]

===== Xanthomonas type III effectors =====

^ Class   ^ Family                           ^ Synonyms                                        ^ Related proteins                                      ^ RefSeq ID (GenBank ID)                                                  ^ Function / Features                                                                                                                                                                                                                                                                     ^
| AvrBs1  | [[:bacteria:t3e:avrbs1|AvrBs1]]  |                                                 | AvrA                                                  | [[https://www.ncbi.nlm.nih.gov/protein/WP_011037255.1|WP_011037255.1]]  |                                                                                                                                                                                                                                                                                         |
| AvrBs2  | [[:bacteria:t3e:avrbs2|AvrBs2]]  |                                                 |                                                       | [[https://www.ncbi.nlm.nih.gov/protein/WP_039418336.1|WP_039418336.1]]  | [[https://www.ebi.ac.uk/interpro/entry/InterPro/IPR030395/|Glycerophosphodiester phosphodiesterase domain]]                                                                                                                                                                             |
| AvrBs3  | [[:bacteria:t3e:avrbs3|AvrBs3]]  | PthA, PthB, PthN, PthXo, AvrXa7, AvrXa27, TALE  | RipTAL                                                | [[https://www.ncbi.nlm.nih.gov/protein/WP_011052943.1|WP_011052943.1]]  | [[https://www.ebi.ac.uk/interpro/entry/InterPro/IPR005042/|TAL effector repeat]]; Transcription activator in eukaryotic host cell; Nuclear localization                                                                                                                                 |
| XopB    | [[:bacteria:t3e:xopb|XopB]]      |                                                 | HopD1 (HopPtoD1, AvrPphD1), RipD                      | [[https://www.ncbi.nlm.nih.gov/protein/WP_039417318.1|WP_039417318.1]]  |                                                                                                                                                                                                                                                                                         |
| XopC    | [[:bacteria:t3e:xopc|XopC1]]     |                                                 | RipC2                                                 | [[https://www.ncbi.nlm.nih.gov/protein/WP_011347616.1|WP_011347616.1]]  | [[https://www.ebi.ac.uk/interpro/entry/InterPro/IPR000836/|Phosphoribosyltransferase domain]]; [[https://www.ebi.ac.uk/interpro/entry/InterPro/IPR041492/|Haloacid dehalogenase-like hydrolase]]                                                                                        |
| XopC    | [[:bacteria:t3e:xopc|XopC2]]     |                                                 | RipC1                                                 | [[https://www.ncbi.nlm.nih.gov/protein/WP_041183113.1|WP_041183113.1]]  |                                                                                                                                                                                                                                                                                         |
| XopD    | [[:bacteria:t3e:xopd|XopD]]      |                                                 |                                                       | [[https://www.ncbi.nlm.nih.gov/protein/WP_228949438.1|WP_228949438.1]]  | C48-family SUMO cysteine protease ([[https://www.ebi.ac.uk/interpro/entry/InterPro/IPR003653/|Ulp1 protease family]]); EAR motif; DNA binding; Nuclear localization                                                                                                                     |
| XopE    | [[:bacteria:t3e:xope1|XopE1]]    | AvrXacE1                                        | HopX (AvrPphE), RipE1                                 | [[https://www.ncbi.nlm.nih.gov/protein/WP_011345998.1|WP_011345998.1]]  | Putative transglutaminase                                                                                                                                                                                                                                                               |
| XopE    | [[:bacteria:t3e:xope2|XopE2]]    | AvrXacE3, AvrXccE1                              | HopX (AvrPphE), RipE1                                 | [[https://www.ncbi.nlm.nih.gov/protein/WP_011347479.1|WP_011347479.1]]  | Putative transglutaminase                                                                                                                                                                                                                                                               |
| XopE    | [[:bacteria:t3e:xope3|XopE3]]    | AvrXacE2                                        | HopX (AvrPphE), RipE1                                 | [[https://www.ncbi.nlm.nih.gov/protein/WP_011052114.1|WP_011052114.1]]  | Putative transglutaminase                                                                                                                                                                                                                                                               |
| XopE    | [[:bacteria:t3e:xope4|XopE4]]    |                                                 | RipE1                                                 | [[https://www.ncbi.nlm.nih.gov/protein/WP_244170787.1|WP_244170787.1]]  | Putative transglutaminase                                                                                                                                                                                                                                                               |
| XopE    | [[:bacteria:t3e:xope5|XopE5]]    |                                                 | HopX (AvrPphE), RipE1                                 | [[https://www.ncbi.nlm.nih.gov/protein/WP_260607984.1|WP_260607984.1]]  | Putative transglutaminase                                                                                                                                                                                                                                                               |
| XopF    | [[:bacteria:t3e:xopf|XopF1]]     | Hpa4                                            |                                                       | [[https://www.ncbi.nlm.nih.gov/protein/WP_011346095.1|WP_011346095.1]]  |                                                                                                                                                                                                                                                                                         |
| XopF    | [[:bacteria:t3e:xopf|XopF2]]     |                                                 |                                                       | [[https://www.ncbi.nlm.nih.gov/protein/WP_011348008.1|WP_011348008.1]]  |                                                                                                                                                                                                                                                                                         |
| XopF    | [[:bacteria:t3e:xopf|XopF3]]     |                                                 |                                                       | [[https://www.ncbi.nlm.nih.gov/protein/WP_039005675.1|WP_039005675.1]]  |                                                                                                                                                                                                                                                                                         |
| XopG    | [[:bacteria:t3e:xopg|XopG1]]     |                                                 | HopH (HopPtoH), RipAX2                                | [[https://www.ncbi.nlm.nih.gov/protein/WP_011346758.1|WP_011346758.1]]  | [[https://www.ebi.ac.uk/interpro/entry/pfam/PF14891/|Peptidase_M91 superfamily]]; HEXXH motif, typical of zinc metallopeptidases                                                                                                                                                        |
| XopG    | [[:bacteria:t3e:xopg|XopG2]]     |                                                 | HopH (HopPtoH), RipAX2                                | [[https://www.ncbi.nlm.nih.gov/protein/WP_011038360.1|WP_011038360.1]]  | [[https://www.ebi.ac.uk/interpro/entry/pfam/PF14891/|Peptidase_M91 superfamily]]; HEXXH motif, typical of zinc metallopeptidases                                                                                                                                                        |
| XopG    | [[:bacteria:t3e:xopg|XopG3]]     |                                                 | HopH (HopPtoH), RipAX1                                | [[https://www.ncbi.nlm.nih.gov/protein/WP_084217840.1|WP_084217840.1]]  | [[https://www.ebi.ac.uk/interpro/entry/pfam/PF14891/|Peptidase_M91 superfamily]]; HEXXH motif, typical of zinc metallopeptidases                                                                                                                                                        |
| XopH    | [[:bacteria:t3e:xoph|XopH1]]     | AvrBs1.1, AvrBs7                                | HopAO1 (HopPtoD2), RipBL                              | [[https://www.ncbi.nlm.nih.gov/protein/WP_011345706.1|WP_011345706.1]]  | [[https://www.ebi.ac.uk/interpro/entry/pfam/PF14566/|Protein tyrosine phosphatase-like phytase]]; [[https://www.ebi.ac.uk/interpro/entry/InterPro/IPR000387/|Tyrosine-specific protein phosphatase]]                                                                                    |
| XopH    | [[:bacteria:t3e:xoph|XopH2]]     |                                                 | HopAO1 (HopPtoD2), RipBL                              | [[https://www.ncbi.nlm.nih.gov/protein/WP_010377341.1|WP_010377341.1]]  | [[https://www.ebi.ac.uk/interpro/entry/pfam/PF14566/|Protein tyrosine phosphatase-like phytase]]; [[https://www.ebi.ac.uk/interpro/entry/InterPro/IPR000387/|Tyrosine-specific protein phosphatase]]                                                                                    |
| XopI    | [[:bacteria:t3e:xopi|XopI1]]     |                                                 |                                                       | [[https://www.ncbi.nlm.nih.gov/protein/WP_011346406.1|WP_011346406.1]]  | [[https://www.ebi.ac.uk/interpro/entry/InterPro/IPR001810/|F-box domain]]                                                                                                                                                                                                               |
| XopI    | [[:bacteria:t3e:xopi|XopI2]]     |                                                 |                                                       | [[https://www.ncbi.nlm.nih.gov/protein/WP_010367684.1|WP_010367684.1]]  | [[https://www.ebi.ac.uk/interpro/entry/InterPro/IPR001810/|F-box domain]]                                                                                                                                                                                                               |
| XopJ    | [[:bacteria:t3e:xopj1|XopJ1]]    |                                                 | HopZ1, RipP1                                          | [[https://www.ncbi.nlm.nih.gov/protein/WP_011347382.1|WP_011347382.1]]  | [[https://www.ebi.ac.uk/interpro/entry/InterPro/IPR005083/|Ser/Thr acetyltransferase]]                                                                                                                                                                                                  |
| XopJ    | [[:bacteria:t3e:xopj2|XopJ2]]    | AvrBsT                                          | HopZ1, RipP1                                          | [[https://www.ncbi.nlm.nih.gov/protein/WP_074052319.1|WP_074052319.1]]  | [[https://www.ebi.ac.uk/interpro/entry/InterPro/IPR005083/|Ser/Thr acetyltransferase]]                                                                                                                                                                                                  |
| XopJ    | [[:bacteria:t3e:xopj3|XopJ3]]    | AvrRxv                                          | HopZ1, RipP1                                          | [[https://www.ncbi.nlm.nih.gov/protein/WP_011346137.1|WP_011346137.1]]  | [[https://www.ebi.ac.uk/interpro/entry/InterPro/IPR005083/|Ser/Thr acetyltransferase]]                                                                                                                                                                                                  |
| XopJ    | [[:bacteria:t3e:xopj4|XopJ4]]    | AvrXv4                                          | HopZ1, RipP1 (formerly PopP1)                         | [[https://www.ncbi.nlm.nih.gov/protein/WP_008572727.1|WP_008572727.1]]  | [[https://www.ebi.ac.uk/interpro/entry/InterPro/IPR005083/|Ser/Thr acetyltransferase]]                                                                                                                                                                                                  |
| XopJ    | [[:bacteria:t3e:xopj5|XopJ5]]    | AvrXccB                                         | HopZ1, RipK, RipP1                                    | [[https://www.ncbi.nlm.nih.gov/protein/WP_228442257.1|WP_228442257.1]]  | [[https://www.ebi.ac.uk/interpro/entry/InterPro/IPR005083/|Ser/Thr acetyltransferase]]                                                                                                                                                                                                  |
| XopJ    | [[:bacteria:t3e:xopj6|XopJ6]]    |                                                 | RipP2 (formerly PopP2)                                | [[https://www.ncbi.nlm.nih.gov/protein/WP_196765268.1|WP_196765268.1]]  | [[https://www.ebi.ac.uk/interpro/entry/InterPro/IPR005083/|Ser/Thr acetyltransferase]]                                                                                                                                                                                                  |
| XopK    | [[:bacteria:t3e:xopk|XopK]]      |                                                 |                                                       | [[https://www.ncbi.nlm.nih.gov/protein/WP_027703763.1|WP_027703763.1]]  |                                                                                                                                                                                                                                                                                         |
| XopL    | [[:bacteria:t3e:xopl|XopL]]      |                                                 | RipAC (formerly PopC)                                 | [[https://www.ncbi.nlm.nih.gov/protein/WP_218498620.1|WP_218498620.1]]  | [[https://www.ebi.ac.uk/interpro/entry/InterPro/IPR003591/|LRR motif]]; [[https://www.ebi.ac.uk/interpro/entry/InterPro/IPR001611/|LRR domain]]                                                                                                                                         |
| XopM    | [[:bacteria:t3e:xopm|XopM]]      |                                                 |                                                       | [[https://www.ncbi.nlm.nih.gov/protein/WP_011346113.1|WP_011346113.1]]  |                                                                                                                                                                                                                                                                                         |
| XopN    | [[:bacteria:t3e:xopn|XopN]]      |                                                 | HopAU1                                                | [[https://www.ncbi.nlm.nih.gov/protein/WP_011348010.1|WP_011348010.1]]  | ARM/HEAT repeat                                                                                                                                                                                                                                                                         |
| XopO    | [[:bacteria:t3e:xopo|XopO]]      |                                                 | HopK1 (HopPtoK, HolPtoAB) N-terminal domain, AvrRps4  | [[https://www.ncbi.nlm.nih.gov/protein/WP_011346566.1|WP_011346566.1]]  | [[https://www.ebi.ac.uk/interpro/entry/cdd/CD21837/|AvrRps4 C-terminal region]]                                                                                                                                                                                                         |
| XopP    | [[:bacteria:t3e:xopp|XopP]]      |                                                 | RipH3 (formerly Hlk)                                  | [[https://www.ncbi.nlm.nih.gov/protein/WP_104613784.1|WP_104613784.1]]  |                                                                                                                                                                                                                                                                                         |
| XopQ    | [[:bacteria:t3e:xopq|XopQ]]      |                                                 | HopQ1 (HolPtoQ), RipB                                 | [[https://www.ncbi.nlm.nih.gov/protein/WP_011349176.1|WP_011349176.1]]  | [[https://www.ebi.ac.uk/interpro/entry/InterPro/IPR001910/|Inosine/uridine-preferring nucleoside hydrolase]]                                                                                                                                                                            |
| XopR    | [[:bacteria:t3e:xopr|XopR]]      |                                                 |                                                       | [[https://www.ncbi.nlm.nih.gov/protein/WP_011260681.1|WP_011260681.1]]  |                                                                                                                                                                                                                                                                                         |
| XopS    | [[:bacteria:t3e:xops|XopS]]      |                                                 |                                                       | [[https://www.ncbi.nlm.nih.gov/protein/WP_039418869.1|WP_039418869.1]]  |                                                                                                                                                                                                                                                                                         |
| XopT    | [[:bacteria:t3e:xopt|XopT]]      |                                                 |                                                       | [[https://www.ncbi.nlm.nih.gov/protein/WP_199285673.1|WP_199285673.1]]  | [[https://www.ebi.ac.uk/interpro/entry/InterPro/IPR035915/|Plectin-repeat]]                                                                                                                                                                                                             |
| XopU    | [[:bacteria:t3e:xopu|XopU]]      |                                                 |                                                       | [[https://www.ncbi.nlm.nih.gov/protein/WP_011408937.1|WP_011408937.1]]  |                                                                                                                                                                                                                                                                                         |
| XopV    | [[:bacteria:t3e:xopv|XopV]]      |                                                 | RipAD                                                 | [[https://www.ncbi.nlm.nih.gov/protein/WP_011409498.1|WP_011409498.1]]  |                                                                                                                                                                                                                                                                                         |
| XopW    | [[:bacteria:t3e:xopw|XopW]]      |                                                 |                                                       | [[https://www.ncbi.nlm.nih.gov/protein/WP_228329674.1|WP_228329674.1]]  |                                                                                                                                                                                                                                                                                         |
| XopX    | [[:bacteria:t3e:xopx|XopX]]      |                                                 | HopAE1 (HolPsyAE), RipBI                              | [[https://www.ncbi.nlm.nih.gov/protein/WP_011346212.1|WP_011346212.1]]  |                                                                                                                                                                                                                                                                                         |
| XopY    | [[:bacteria:t3e:xopy|XopY]]      |                                                 |                                                       | [[https://www.ncbi.nlm.nih.gov/protein/WP_011408080.1|WP_011408080.1]]  |                                                                                                                                                                                                                                                                                         |
| XopZ    | [[:bacteria:t3e:xopz|XopZ1]]     |                                                 | HopAS1                                                | [[https://www.ncbi.nlm.nih.gov/protein/WP_011259177.1|WP_011259177.1]]  |                                                                                                                                                                                                                                                                                         |
| XopZ    | [[:bacteria:t3e:xopz|XopZ2]]     |                                                 | HopAS1                                                | [[http://www.ncbi.nlm.nih.gov/protein/WP_039421390.1|WP_039421390.1]]   |                                                                                                                                                                                                                                                                                         |
| XopAA   | [[:bacteria:t3e:xopaa|XopAA]]    | Ecf                                             | HopAE1 (HolPsyAE), weakly related to RipBI            | [[https://www.ncbi.nlm.nih.gov/protein/WP_041855088.1|WP_041855088.1]]  | Early chlorosis factor; Proteasome/cyclosome repeat                                                                                                                                                                                                                                     |
| XopAB   | [[:bacteria:t3e:xopab|XopAB]]    |                                                 | weakly related to XopN                                | [[https://www.ncbi.nlm.nih.gov/protein/WP_011409110.1|WP_011409110.1]]  |                                                                                                                                                                                                                                                                                         |
| XopAC   | [[:bacteria:t3e:xopac|XopAC]]    | AvrAC                                           | RipAC (formerly PopC)                                 | [[https://www.ncbi.nlm.nih.gov/protein/WP_011269629.1|WP_011269629.1]]  | [[https://www.ebi.ac.uk/interpro/entry/InterPro/IPR003591/|LRR motif]]; [[https://www.ebi.ac.uk/interpro/entry/InterPro/IPR032675/|LRR domain]]; [[https://www.ebi.ac.uk/interpro/entry/InterPro/IPR003812/|Fido domain]]; Vascular hypersensitivity in //Arabidopsis// landrace Col-0  |
| XopAD   | [[:bacteria:t3e:xopad|XopAD]]    |                                                 | RipS3                                                 | [[https://www.ncbi.nlm.nih.gov/protein/WP_011409710.1|WP_011409710.1]]  | SKWP repeat protein; [[https://www.ebi.ac.uk/interpro/entry/InterPro/IPR011989/|Armadillo-like helical repeat]]; [[https://www.ebi.ac.uk/interpro/entry/InterPro/IPR016024/|Armadillo-type fold]]; [[https://www.ebi.ac.uk/interpro/entry/InterPro/IPR007685/|RelA/SpoT superfamily]]   |
| XopAE   | [[:bacteria:t3e:xopae|XopAE]]    | HpaF/HpaG                                       | RipAC (formerly PopC)                                 | [[https://www.ncbi.nlm.nih.gov/protein/WP_011050288.1|WP_011050288.1]]  | [[https://www.ebi.ac.uk/interpro/entry/InterPro/IPR003591/|LRR motif]]; [[https://www.ebi.ac.uk/interpro/entry/InterPro/IPR032675/|LRR domain]]                                                                                                                                         |
| XopAF   | [[:bacteria:t3e:xopaf|XopAF1]]   | AvrXv3                                          | HopAF1 (HopPtoJ), RipBD                               | [[https://www.ncbi.nlm.nih.gov/protein/WP_008577605.1|WP_008577605.1]]  |                                                                                                                                                                                                                                                                                         |
| XopAF   | [[:bacteria:t3e:xopaf|XopAF2]]   |                                                 | HopAF1 (HopPtoJ), RipBD                               | [[https://www.ncbi.nlm.nih.gov/protein/WP_227479740.1|WP_227479740.1]]  |                                                                                                                                                                                                                                                                                         |
| XopAG   | [[:bacteria:t3e:xopag|XopAG1]]   | AvrGf1                                          | HopG1 (HopPtoG), HolPtoW, RipO1                       | [[https://www.ncbi.nlm.nih.gov/protein/WP_272820829.1|WP_272820829.1]]  |                                                                                                                                                                                                                                                                                         |
| XopAG   | [[:bacteria:t3e:xopag|XopAG2]]   | AvrGf2                                          | HopG1 (HopPtoG), HolPtoW, RipO1                       | [[https://www.ncbi.nlm.nih.gov/protein/WP_007970248.1|WP_007970248.1]]  |                                                                                                                                                                                                                                                                                         |
| XopAH   | [[:bacteria:t3e:xopah|XopAH]]    | AvrXccC                                         | AvrB/AvrC (AvrPphC)                                   | [[https://www.ncbi.nlm.nih.gov/protein/WP_011037263.1|WP_011037263.1]]  | [[https://www.ebi.ac.uk/interpro/entry/InterPro/IPR008798/|AvrB/AvrC-family avirulence protein]]                                                                                                                                                                                        |
| XopAI   | [[:bacteria:t3e:xopai|XopAI]]    |                                                 | HopO1 (HopPtoO, HopPtoS), HopAI1 (HolPtoAI)           | [[https://www.ncbi.nlm.nih.gov/protein/WP_011052119.1|WP_011052119.1]]  | [[https://www.ebi.ac.uk/interpro/entry/InterPro/IPR000768/|NAD:arginine ADP-ribosyltransferase]]                                                                                                                                                                                        |
| XopAJ   | [[:bacteria:t3e:xopaj|XopAJ]]    | AvrRxo1                                         |                                                       | [[https://www.ncbi.nlm.nih.gov/protein/WP_014504815.1|WP_014504815.1]]  | [[https://www.ebi.ac.uk/interpro/entry/InterPro/IPR027417/|P-loop containing nucleoside triphosphate hydrolase]]                                                                                                                                                                        |
| XopAK   | [[:bacteria:t3e:xopak|XopAK]]    |                                                 | HopK1 (HopPtoK, HolPtoAB) C-terminal domain, RipBQ    | [[https://www.ncbi.nlm.nih.gov/protein/WP_269466020.1|WP_269466020.1]]  |                                                                                                                                                                                                                                                                                         |
| XopAL   | [[:bacteria:t3e:xopal1|XopAL1]]  |                                                 | Eop3, weakly similar to HopX, RipE2                   | [[https://www.ncbi.nlm.nih.gov/protein/WP_274360846.1|WP_274360846.1]]  |                                                                                                                                                                                                                                                                                         |
| XopAL   | [[:bacteria:t3e:xopal2|XopAL2]]  |                                                 | Eop3, RS_T3E_Hyp14                                    | [[https://www.ncbi.nlm.nih.gov/protein/WP_012437264.1|WP_012437264.1]]  |                                                                                                                                                                                                                                                                                         |
| XopAM   | [[:bacteria:t3e:xopam|XopAM]]    |                                                 | HopR1, RipR                                           | [[https://www.ncbi.nlm.nih.gov/protein/WP_012438997.1|WP_012438997.1]]  | AvrE-family effector                                                                                                                                                                                                                                                                    |
| XopAN   | [[:bacteria:t3e:xopan|XopAN]]    |                                                 |                                                       |                                                                         |                                                                                                                                                                                                                                                                                         |
| XopAO   | [[:bacteria:t3e:xopao|XopAO]]    |                                                 | AvrRpm1, RipBA                                        | [[https://www.ncbi.nlm.nih.gov/protein/WP_162267513.1|WP_162267513.1]]  |                                                                                                                                                                                                                                                                                         |
| XopAP   | [[:bacteria:t3e:xopap|XopAP]]    |                                                 | RipAL                                                 | [[https://www.ncbi.nlm.nih.gov/protein/WP_236504155.1|WP_236504155.1]]  | [[https://www.ebi.ac.uk/interpro/entry/InterPro/IPR029058/|α/β hydrolase fold]]; [[https://www.ebi.ac.uk/interpro/entry/pfam/PF01764/|Class-3 lipase]]                                                                                                                                  |
| XopAQ   | [[:bacteria:t3e:xopaq|XopAQ]]    |                                                 | RipAH/RipAG                                           | [[https://www.ncbi.nlm.nih.gov/protein/WP_233366621.1|WP_233366621.1]]  |                                                                                                                                                                                                                                                                                         |
| XopAR   | [[:bacteria:t3e:xopar|XopAR]]    |                                                 | RipBE                                                 | [[https://www.ncbi.nlm.nih.gov/protein/APO95022.1|(APO95022.1)]]        |                                                                                                                                                                                                                                                                                         |
| XopAS   | [[:bacteria:t3e:xopas|XopAS]]    |                                                 | HopAS1                                                | [[https://www.ncbi.nlm.nih.gov/protein/WP_229015407.1|WP_229015407.1]]  |                                                                                                                                                                                                                                                                                         |
| XopAT   | [[:bacteria:t3e:xopat|XopAT]]    |                                                 |                                                       | [[https://www.ncbi.nlm.nih.gov/protein/AEL06363.1|(AEL06363.1)]]        |                                                                                                                                                                                                                                                                                         |
| XopAU   | [[:bacteria:t3e:xopau|XopAU]]    |                                                 |                                                       | [[https://www.ncbi.nlm.nih.gov/protein/WP_041855031.1|WP_041855031.1]]  | Serine/threonine kinase; [[https://www.ebi.ac.uk/interpro/entry/InterPro/IPR000719/|Protein kinase domain]]; [[https://www.ebi.ac.uk/interpro/entry/InterPro/IPR017441/|ATP-binding site]]                                                                                              |
| XopAV   | [[:bacteria:t3e:xopav|XopAV1]]   |                                                 |                                                       | [[https://www.ncbi.nlm.nih.gov/protein/WP_065628638.1|WP_065628638.1]]  |                                                                                                                                                                                                                                                                                         |
| XopAV   | [[:bacteria:t3e:xopav|XopAV2]]   |                                                 |                                                       | [[https://www.ncbi.nlm.nih.gov/protein/WP_011269951.1|WP_011269951.1]]  |                                                                                                                                                                                                                                                                                         |
| XopAW   | [[:bacteria:t3e:xopaw|XopAW]]    |                                                 |                                                       | [[https://www.ncbi.nlm.nih.gov/protein/WP_011348129.1|WP_011348129.1]]  | Calcium-binding protein; [[https://www.ebi.ac.uk/interpro/entry/InterPro/IPR002048/|EF-hand domain]]; [[https://www.ebi.ac.uk/interpro/entry/InterPro/IPR018247/|Calcium-binding site]]                                                                                                 |
| XopAX   | [[:bacteria:t3e:xopax|XopAX]]    |                                                 |                                                       | [[https://www.ncbi.nlm.nih.gov/protein/WP_041854960.1|WP_041854960.1]]  |                                                                                                                                                                                                                                                                                         |
| XopAY   | [[:bacteria:t3e:xopay|XopAY]]    |                                                 |                                                       |                                                                         |                                                                                                                                                                                                                                                                                         |
| XopAZ   | [[:bacteria:t3e:xopaz|XopAZ]]    |                                                 |                                                       | [[https://www.ncbi.nlm.nih.gov/protein/WP_104549896.1|WP_104549896.1]]  | SlpA superfamily; [[https://www.ebi.ac.uk/interpro/entry/InterPro/IPR001179/|FKBP-type peptidyl-prolyl cis-trans isomerase]]                                                                                                                                                            |
| XopBA   | [[:bacteria:t3e:xopba|XopBA]]    |                                                 | HopW1, RipBP                                          | [[https://www.ncbi.nlm.nih.gov/protein/WP_227478587.1|WP_227478587.1]]  |                                                                                                                                                                                                                                                                                         |
| XopBB   | [[:bacteria:t3e:xopbb|XopBB]]    |                                                 | HopF2 (AvrPphF)                                       | [[https://www.ncbi.nlm.nih.gov/protein/WP_251761698.1|WP_251761698.1]]  |                                                                                                                                                                                                                                                                                         |
| XopBC   |                                  |                                                 |                                                       |                                                                         | = XopAV class                                                                                                                                                                                                                                                                           |
| XopBD   |                                  |                                                 |                                                       |                                                                         | = XopAT class                                                                                                                                                                                                                                                                           |
| XopBE   |                                  |                                                 |                                                       |                                                                         | = XopC class                                                                                                                                                                                                                                                                            |
| XopBF   |                                  |                                                 |                                                       |                                                                         | = XopAV class                                                                                                                                                                                                                                                                           |
| XopBG   | [[:bacteria:t3e:xopbg|XopBG]]    |                                                 |                                                       | [[https://www.ncbi.nlm.nih.gov/protein/WP_145953988.1|WP_145953988.1]]  |                                                                                                                                                                                                                                                                                         |

===== Avirulence or type III-secreted proteins that are not considered effectors in a narrow sense =====

^Name ^Synonyms ^Related proteins ^RefSeq ID (GenBank ID) ^Function / Features ^Reference |
|AvrXccA1 |AvrXca |  |[[https://www.ncbi.nlm.nih.gov/protein/WP_011039290.1|WP_011039290.1]] |Avirulence protein, perhaps not a T3E |Parker //et al.//, 1993  |
|AvrXccA2 |  |  |[[https://www.ncbi.nlm.nih.gov/protein/WP_274318562.1|WP_274318562.1]] |Avirulence protein, perhaps not a T3E |  |
|HpaA |  |  |[[https://www.ncbi.nlm.nih.gov/protein/WP_011346100.1|WP_011346100.1]] |Type III secretion control protein, perhaps not a T3E |Lorenz //et al.//, 2008  |
|HpaT |  |  |[[https://www.ncbi.nlm.nih.gov/protein/WP_058196718.1|WP_058196718.1]] |Putative translocon protein, not a T3E |Pesce //et al.//, 2017  |
|HrpB2 |  |  |[[https://www.ncbi.nlm.nih.gov/protein/WP_008575450.1|WP_008575450.1]] |Putative inner rod protein, not a T3E |Rossier //et al.//, 2000; Scheibner //et al.//, 2016  |
|HrpE |HrpE1 |  |[[https://www.ncbi.nlm.nih.gov/protein/WP_011346098.1|WP_011346098.1]] |Major subunit of the Hrp pilus |Weber //et al.//, 2005; Weber & Koebnik, 2005; Weber & Koebnik, 2006; Gottig //et al.//, 2018  |
|HrpF |  |RipF (formerly PopF) |[[https://www.ncbi.nlm.nih.gov/protein/WP_011346092.1|WP_011346092.1]] |Putative translocon protein, not a T3E |Huguet & Bonas, 1997; Meyer //et al.//, 2006  |
|HrpW |  |RipW (formerly PopW) |[[https://www.ncbi.nlm.nih.gov/protein/WP_005926112.1|WP_005926112.1]] |[[https://www.ebi.ac.uk/interpro/entry/pfam/PF03211|Pectate lyase]], perhaps not a T3E |Charkowski //et al.//, 1998; Li //et al.//, 2010  |
|XopA |Hpa1/HpaG |  |[[https://www.ncbi.nlm.nih.gov/protein/WP_011346111.1|WP_011346111.1]] |Harpin, perhaps not a T3E |Zhu //et al.//, 2000; Kim //et al.//, 2004; Sgro //et al.//, 2012; Wang //et al.//, 2018  |

===== References =====

Charkowski AO, Alfano JR, Preston G, Yuan J, He SY, Collmer A (1998). The //Pseudomonas syringae// pv. //tomato// HrpW protein has domains similar to harpins and pectate lyases and can elicit the plant hypersensitive response and bind to pectate. J. Bacteriol. 180: 5211-5217. DOI: [[https://doi.org/10.1128/JB.180.19.5211-5217.1998|10.1128/JB.180.19.5211-5217.1998]]

Gottig N, Vranych CV, Sgro GG, Piazza A, Ottado J (2018). HrpE, the major component of the //Xanthomonas// type three protein secretion pilus, elicits plant immunity responses. Sci. Rep. 8: 9842. DOI: [[https://doi.org/10.1038/s41598-018-27869-1|10.1038/s41598-018-27869-1]]

Huguet E, Bonas U (1997). HrpF of //Xanthomonas campestris// pv. //vesicatoria// encodes an 87-kDa protein with homology to NoIX of //Rhizobium fredii//. Mol. Plant Microbe Interact. 10: 488-498. DOI: [[https://doi.org/10.1094/MPMI.1997.10.4.488|10.1094/MPMI.1997.10.4.488]]

Kim JG, Jeon E, Oh J, Moon JS, Hwang I (2004). Mutational analysis of //Xanthomonas// harpin HpaG identifies a key functional region that elicits the hypersensitive response in nonhost plants. J. Bacteriol. 186: 6239-6247. DOI: [[https://doi.org/10.1128/JB.186.18.6239-6247.2004|10.1128/JB.186.18.6239-6247.2004]]

Li JG, Liu HX, Cao J, Chen LF, Gu C, Allen C, Guo JH (2010). PopW of //Ralstonia solanacearum//, a new two-domain harpin targeting the plant cell wall. Mol. Plant Pathol. 11: 371-381. DOI: [[https://doi.org/10.1111/j.1364-3703.2010.00610.x|10.1111/j.1364-3703.2010.00610.x]]

Lindeberg M, Stavrinides J, Chang JH, Alfano JR, Collmer A, Dangl JL, Greenberg JT, Mansfield JW, Guttman DS (2005). Proposed guidelines for a unified nomenclature and phylogenetic analysis of type III Hop effector proteins in the plant pathogen// Pseudomonas syringae//. Mol. Plant Microbe Interact. 18: 275-282. DOI: [[https://doi.org/10.1094/MPMI-18-0275|10.1094/MPMI-18-0275]]

Lorenz C, Kirchner O, Egler M, Stuttmann J, Bonas U, Büttner D (2008). HpaA from //Xanthomonas// is a regulator of type III secretion. Mol. Microbiol. 69: 344-360. DOI: [[https://doi.org/10.1111/j.1365-2958.2008.06280.x|10.1111/j.1365-2958.2008.06280.x]]

Meyer D, Cunnac S, Guéneron M, Declercq C, Van Gijsegem F, Lauber E, Boucher C, Arlat M (2006). PopF1 and PopF2, two proteins secreted by the type III protein secretion system of //Ralstonia solanacearum//, are translocators belonging to the HrpF/NopX family. J. Bacteriol. 188: 4903-4917. DOI: [[https://doi.org/10.1128/JB.00180-06|10.1128/JB.00180-06]]

Parker JE, Barber CE, Fan MJ, Daniels MJ (1993). Interaction of //Xanthomonas campestris// with //Arabidopsis thaliana//: characterization of a gene from //X. c.// pv. //raphani// that confers avirulence to most //A. thaliana// accessions. Mol. Plant Microbe Interact. 6: 216-224. DOI: [[https://doi.org/10.1094/mpmi-6-216|10.1094/mpmi-6-216]]

Peeters N, Carrère S, Anisimova M, Plener L, Cazalé AC, Genin S (2013). Repertoire, unified nomenclature and evolution of the Type III effector gene set in the //Ralstonia solanacearum// species complex. BMC Genomics 14: 859. DOI: [[https://doi.org/10.1186/1471-2164-14-859|10.1186/1471-2164-14-859]]

Pesce C, Jacobs JM, Berthelot E, Perret M, Vancheva T, Bragard C, Koebnik R (2017). Comparative genomics identifies a novel conserved protein, HpaT, in proteobacterial type III secretion systems that do not possess the putative translocon protein HrpF. Front. Microbiol. 8: 1177. DOI: [[https://doi.org/10.3389/fmicb.2017.01177|10.3389/fmicb.2017.01177]]

Rossier O, Van den Ackerveken G, Bonas U (2000). HrpB2 and HrpF from //Xanthomonas// are type III-secreted proteins and essential for pathogenicity and recognition by the host plant. Mol. Microbiol. 38: 828-838. DOI: [[https://doi.org/10.1046/j.1365-2958.2000.02173.x|10.1046/j.1365-2958.2000.02173.x]]

Sabbagh CRR, Carrere S, Lonjon F, Vailleau F, Macho AP, Genin S, Peeters N (2019). Pangenomic type III effector database of the plant pathogenic //Ralstonia// spp. PeerJ 7: e7346. DOI: [[https://doi.org/10.7717/peerj.7346|10.7717/peerj.7346]]

Scheibner F, Schulz S, Hausner J, Marillonnet S, Büttner D (2016). Type III-dependent translocation of HrpB2 by a nonpathogenic //hpaABC// mutant of the plant-pathogenic bacterium //Xanthomonas campestris// pv. //vesicatoria//. Appl. Environ. Microbiol. 82: 3331-3347. DOI: [[https://doi.org/10.1128/AEM.00537-16|10.1128/AEM.00537-16]]

Sgro GG, Ficarra FA, Dunger G, Scarpeci TE, Valle EM, Cortadi A, Orellano EG, Gottig N, Ottado J (2012). Contribution of a harpin protein from //Xanthomonas axonopodis// pv. //citri// to pathogen virulence. Mol. Plant Pathol. 13: 1047-1059. DOI: [[https://doi.org/10.1111/j.1364-3703.2012.00814.x|10.1111/j.1364-3703.2012.00814.x]]

Wang X, Zhang L, Ji H, Mo X, Li P, Wang J, Dong H (2018). Hpa1 is a type III translocator in //Xanthomonas oryzae// pv. //oryzae//. BMC Microbiol. 18: 105. DOI: [[https://doi.org/10.1186/s12866-018-1251-3|10.1186/s12866-018-1251-3]]

Weber E, Koebnik R (2005). Domain structure of HrpE, the Hrp pilus subunit of //Xanthomonas campestris// pv. //vesicatoria//. J. Bacteriol. 187: 6175-6186. DOI: [[https://doi.org/10.1128/JB.187.17.6175-6186.2005|10.1128/JB.187.17.6175-6186.2005]]

Weber E, Koebnik R (2006). Positive selection of the Hrp pilin HrpE of the plant pathogen //Xanthomonas//. J. Bacteriol. 188: 1405-1410. DOI: [[https://doi.org/10.1128/JB.188.4.1405-1410.2006|10.1128/JB.188.4.1405-1410.2006]]

Weber E, Ojanen-Reuhs T, Huguet E, Hause G, Romantschuk M, Korhonen TK, Bonas U, Koebnik R (2005). The type III-dependent Hrp pilus is required for productive interaction of //Xanthomonas campestris// pv. //vesicatoria// with pepper host plants. J. Bacteriol. 187: 2458-2468. DOI: [[https://doi.org/10.1128/JB.187.7.2458-2468.2005|10.1128/JB.187.7.2458-2468.2005]]

Zhu W, MaGbanua MM, White FF (2000). Identification of two novel hrp-associated genes in the //hrp// gene cluster of //Xanthomonas oryzae// pv. //oryzae//. J. Bacteriol. 182: 1844-1853. DOI: [[https://doi.org/10.1128/JB.182.7.1844-1853.2000|10.1128/JB.182.7.1844-1853.2000]]
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