bacteria:t3e:xopg
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| bacteria:t3e:xopg [2020/12/01 03:48] – The link for RefSeq ID does not seem to be functional. nzp0024_auburn.edu | bacteria:t3e:xopg [2025/02/18 22:41] (current) – jfpothier | ||
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| - | ====== XopG ====== | + | ====== |
| - | Author: [[https:// | + | Author: [[https:// |
| Internal reviewer: [[https:// | Internal reviewer: [[https:// | ||
| - | Expert reviewer: | + | Expert reviewer: |
| Class: XopG\\ | Class: XopG\\ | ||
| - | Family: XopG1, XopG2, XopG3\\ | + | Families: XopG1, XopG2, XopG3\\ |
| - | Prototype: | + | Prototype: |
| - | RefSeq | + | GenBank |
| + | RefSeq ID: XopG1 [[https:// | ||
| 3D structure: [[https:// | 3D structure: [[https:// | ||
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| === How discovered? === | === How discovered? === | ||
| - | XopG was identified based on homology searches using TBLASTN analysis. Known T3E proteins from plant and animal pathogens were used as query against all contigs of the draft genomes of //X. vesicatoria//, | + | XopG was identified based on homology searches using TBLASTN analysis. Known T3E proteins from plant and animal pathogens were used as query against all contigs of the draft genomes of //X. vesicatoria//, |
| === (Experimental) evidence for being a T3E === | === (Experimental) evidence for being a T3E === | ||
| Line 21: | Line 22: | ||
| === Regulation === | === Regulation === | ||
| - | XopG belongs to translocation class B and is still translocated in the absence of HpaB, being constitutively expressed (< | + | XopG belongs to translocation class B and is still translocated in the absence of HpaB, being constitutively expressed (Schulze et al. 2012). XopG was identified as part of the putative HrpX regulon in //X. campestris// |
| === Phenotypes === | === Phenotypes === | ||
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| === Localization === | === Localization === | ||
| - | Confocal laser scanning microscopy revealed a localization of XopG::GFP exclusively to the plant cell nucleus | + | Confocal laser scanning microscopy revealed a localization of XopG::GFP exclusively to the plant cell nucleus (Schulze et al. 2012). |
| === Enzymatic function === | === Enzymatic function === | ||
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| da Silva AC, Ferro JA, Reinach FC, Farah CS, Furlan LR, Quaggio RB, Monteiro-Vitorello CB, Van Sluys MA, Almeida NF, Alves LM, do Amaral AM, Bertolini MC, Camargo LE, Camarotte G, Cannavan F, Cardozo J, Chambergo F, Ciapina LP, Cicarelli RM, Coutinho LL, Cursino-Santos JR, El-Dorry H, Faria JB, Ferreira AJ, Ferreira RC, Ferro MI, Formighieri EF, Franco MC, Greggio CC, Gruber A, Katsuyama AM, Kishi LT, Leite RP, Lemos EG, Lemos MV, Locali EC, Machado MA, Madeira AM, Martinez-Rossi NM, Martins EC, Meidanis J, Menck CF, Miyaki CY, Moon DH, Moreira LM, Novo MT, Okura VK, Oliveira MC, Oliveira VR, Pereira HA, Rossi A, Sena JA, Silva C, de Souza RF, Spinola LA, Takita MA, Tamura RE, Teixeira EC, Tezza RI, Trindade dos Santos M, Truffi D, Tsai SM, White FF, Setubal JC, Kitajima JP (2002). Comparison of the genomes of two // | da Silva AC, Ferro JA, Reinach FC, Farah CS, Furlan LR, Quaggio RB, Monteiro-Vitorello CB, Van Sluys MA, Almeida NF, Alves LM, do Amaral AM, Bertolini MC, Camargo LE, Camarotte G, Cannavan F, Cardozo J, Chambergo F, Ciapina LP, Cicarelli RM, Coutinho LL, Cursino-Santos JR, El-Dorry H, Faria JB, Ferreira AJ, Ferreira RC, Ferro MI, Formighieri EF, Franco MC, Greggio CC, Gruber A, Katsuyama AM, Kishi LT, Leite RP, Lemos EG, Lemos MV, Locali EC, Machado MA, Madeira AM, Martinez-Rossi NM, Martins EC, Meidanis J, Menck CF, Miyaki CY, Moon DH, Moreira LM, Novo MT, Okura VK, Oliveira MC, Oliveira VR, Pereira HA, Rossi A, Sena JA, Silva C, de Souza RF, Spinola LA, Takita MA, Tamura RE, Teixeira EC, Tezza RI, Trindade dos Santos M, Truffi D, Tsai SM, White FF, Setubal JC, Kitajima JP (2002). Comparison of the genomes of two // | ||
| - | Deb S, Ghosh P, Patel HK, Sonti RV (2020). Interaction of the // | + | Deb S, Ghosh P, Patel HK, Sonti RV (2020). Interaction of the // |
| Potnis N, Krasileva K, Chow V, Almeida NF, Patil PB, Ryan RP, Sharlach M, Behlau F, Dow JM, Momol MT, White FF, Preston JF, Vinatzer BA, Koebnik R, Setubal JC, Norman DJ, Staskawicz BJ, Jones JB (2011). Comparative genomics reveals diversity among xanthomonads infecting tomato and pepper. BMC Genomics 12: 146. DOI: [[https:// | Potnis N, Krasileva K, Chow V, Almeida NF, Patil PB, Ryan RP, Sharlach M, Behlau F, Dow JM, Momol MT, White FF, Preston JF, Vinatzer BA, Koebnik R, Setubal JC, Norman DJ, Staskawicz BJ, Jones JB (2011). Comparative genomics reveals diversity among xanthomonads infecting tomato and pepper. BMC Genomics 12: 146. DOI: [[https:// | ||
| Line 60: | Line 62: | ||
| White FF, Potnis N, Jones JB, Koebnik R (2009). The type III effectors of // | White FF, Potnis N, Jones JB, Koebnik R (2009). The type III effectors of // | ||
| + | |||
| + | ===== Acknowledgements ===== | ||
| + | |||
| + | This fact sheet is based upon work from COST Action CA16107 EuroXanth, supported by COST (European Cooperation in Science and Technology). | ||
bacteria/t3e/xopg.1606794481.txt.gz · Last modified: 2023/01/09 10:20 (external edit)
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