EuroXanth DokuWiki

User Tools

Site Tools

Trace: • xopc • xopaj
bacteria:t3e:xope5

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

Both sides previous revisionPrevious revision
Next revision		Previous revision
bacteria:t3e:xope5 [2023/01/09 10:20] – external edit 127.0.0.1bacteria:t3e:xope5 [2025/07/04 23:32] (current) – jfpothier
Line 1: Line 1:
-====== XopE5 ======+====== The Type III Effector XopE5 from //Xanthomonas// ======
  
 Author: [[https://www.researchgate.net/profile/Jaime_Cubero|Jaime Cubero]]\\ Author: [[https://www.researchgate.net/profile/Jaime_Cubero|Jaime Cubero]]\\
 Internal reviewer: [[https://www.researchgate.net/profile/Eran_Bosis|Eran Bosis]]\\ Internal reviewer: [[https://www.researchgate.net/profile/Eran_Bosis|Eran Bosis]]\\
-Expert reviewer: FIXME 
  
 Class: XopE\\ Class: XopE\\
 Family: XopE5\\ Family: XopE5\\
 Prototype: (//Xanthomonas translucens//)\\ Prototype: (//Xanthomonas translucens//)\\
-RefSeq ID: [[https://www.ncbi.nlm.nih.gov/protein/WP_142743200.1|WP_142743200.1]]\\+RefSeq ID: [[https://www.ncbi.nlm.nih.gov/protein/WP_260607984.1?report=genbank&log$=protalign&blast_rank=2&RID=69BFC9GK016|WP_260607984.1]]\\
 3D structure: Unknown 3D structure: Unknown
  
Line 16: Line 15:
  
 XopE5 (HopX1) was first identified by sequence homology searches (Peng //et al//., 2016; Falahi //et al//., 2017). XopE5 (HopX1) was first identified by sequence homology searches (Peng //et al//., 2016; Falahi //et al//., 2017).
 +
 === (Experimental) evidence for being a T3E === === (Experimental) evidence for being a T3E ===
  
Line 35: Line 35:
  
 XopE5 belongs to the HopX effector family, which are part of the transglutaminase superfamily (Nimchuk //et al//., 2007). XopE5 belongs to the HopX effector family, which are part of the transglutaminase superfamily (Nimchuk //et al//., 2007).
 +
 === Interaction partners === === Interaction partners ===
  
Line 44: Line 45:
  
 Yes (//e.g.//, //X. translucens// pv. //cerealis// and pv. //undulosa//). Yes (//e.g.//, //X. translucens// pv. //cerealis// and pv. //undulosa//).
 +
 === In other plant pathogens/symbionts === === In other plant pathogens/symbionts ===
  
Line 52: Line 54:
 Falahi Charkhabi N, Booher NJ, Peng Z, Wang L, Rahimian H, Shams-Bakhsh M, Liu Z, Liu S, White FF, Bogdanove AJ (2017). Complete genome sequencing and targeted mutagenesis reveal virulence vontributions of Tal2 and Tal4b of //Xanthomonas translucens// pv. //undulosa// ICMP11055 in bacterial leaf streak of wheat. Front. Microbiol. 8: 1488. DOI: [[https://doi.org/10.3389/fmicb.2017.01488|10.3389/fmicb.2017.01488]]. Falahi Charkhabi N, Booher NJ, Peng Z, Wang L, Rahimian H, Shams-Bakhsh M, Liu Z, Liu S, White FF, Bogdanove AJ (2017). Complete genome sequencing and targeted mutagenesis reveal virulence vontributions of Tal2 and Tal4b of //Xanthomonas translucens// pv. //undulosa// ICMP11055 in bacterial leaf streak of wheat. Front. Microbiol. 8: 1488. DOI: [[https://doi.org/10.3389/fmicb.2017.01488|10.3389/fmicb.2017.01488]].
  
-Nimchuk ZL, Fisher EJ, Desvaux D, Chang JH, Dangl JL (2007). The HopX (AvrPphE) family of //Pseudomonas syringae// type III effectors require a catalytic triad and a novel N-terminal domain forfunction. Mol. Plant Microbe Interact. 20: 346-357. DOI: [[https://doi.org/10.1094/MPMI-20-4-0346|10.1094/MPMI-20-4-0346]].+Nimchuk ZL, Fisher EJ, Desvaux D, Chang JH, Dangl JL (2007). The HopX (AvrPphE) family of //Pseudomonas syringae// type III effectors require a catalytic triad and a novel N-terminal domain for function. Mol. Plant Microbe Interact. 20: 346-357. DOI: [[https://doi.org/10.1094/MPMI-20-4-0346|10.1094/MPMI-20-4-0346]].
  
 Peng Z, Hu Y, Xie J, Potnis N, Akhunova A, Jones J, Liu Z, White F, Liu S (2016). Long read and single molecule DNA sequencing simplifies genome assembly and TAL effector gene analysis of //Xanthomonas translucens//. BMC Genomics 17: 21. DOI: [[https://doi.org/10.1186/s12864-015-2348-9|10.1186/s12864-015-2348-9]]. Peng Z, Hu Y, Xie J, Potnis N, Akhunova A, Jones J, Liu Z, White F, Liu S (2016). Long read and single molecule DNA sequencing simplifies genome assembly and TAL effector gene analysis of //Xanthomonas translucens//. BMC Genomics 17: 21. DOI: [[https://doi.org/10.1186/s12864-015-2348-9|10.1186/s12864-015-2348-9]].
 +
 +===== Acknowledgements =====
 +
 +This fact sheet is based upon work from COST Action CA16107 EuroXanth, supported by COST (European Cooperation in Science and Technology).
  
bacteria/t3e/xope5.1673259603.txt.gz · Last modified: 2023/01/09 10:20 by 127.0.0.1

Page Tools

Except where otherwise noted, content on this wiki is licensed under the following license: CC Attribution-Share Alike 4.0 International
CC Attribution-Share Alike 4.0 International Donate Powered by PHP Valid HTML5 Valid CSS Driven by DokuWiki