bacteria:t3e:xope5
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| bacteria:t3e:xope5 [2020/04/21 22:23] – external edit 127.0.0.1 | bacteria:t3e:xope5 [2024/12/16 14:15] (current) – [The Type III Effector XopE5 from //Xanthomonas//] rkoebnik | ||
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| - | ====== XopE5 ====== | + | ====== |
| - | Author: Jaime Cubero\\ | + | Author: |
| - | Internal reviewer: | + | Internal reviewer: |
| - | Expert reviewer: FIXME | + | |
| - | Class: | + | Class: |
| - | Family: | + | Family: |
| Prototype: (// | Prototype: (// | ||
| - | RefSeq ID: [[https:// | + | RefSeq ID: [[https:// |
| - | 3D structure: Unknown. | + | 3D structure: Unknown |
| ===== Biological function ===== | ===== Biological function ===== | ||
| === How discovered? === | === How discovered? === | ||
| - | XopE5 (HopX1) was first identified by sequence homology searches (Peng //et al//., 2016; Falahi //et al//., 2017). | ||
| + | XopE5 (HopX1) was first identified by sequence homology searches (Peng //et al//., 2016; Falahi //et al//., 2017). | ||
| === (Experimental) evidence for being a T3E === | === (Experimental) evidence for being a T3E === | ||
| + | |||
| Homology to other XopE effectors. | Homology to other XopE effectors. | ||
| === Regulation === | === Regulation === | ||
| + | |||
| Not known. | Not known. | ||
| === Phenotypes === | === Phenotypes === | ||
| + | |||
| Not known. | Not known. | ||
| === Localization === | === Localization === | ||
| + | |||
| Not known. | Not known. | ||
| === Enzymatic function === | === Enzymatic function === | ||
| - | XopE5 belongs to the HopX effector family, which are part of the transglutaminase superfamily (Nimchuk //et al//., 2007). | ||
| + | XopE5 belongs to the HopX effector family, which are part of the transglutaminase superfamily (Nimchuk //et al//., 2007). | ||
| === Interaction partners === | === Interaction partners === | ||
| + | |||
| Not known. | Not known. | ||
| Line 37: | Line 41: | ||
| === In xanthomonads === | === In xanthomonads === | ||
| - | Yes (//e.g.//, //X. translucens// | ||
| + | Yes (//e.g.//, //X. translucens// | ||
| === In other plant pathogens/ | === In other plant pathogens/ | ||
| + | |||
| Not known. | Not known. | ||
| ===== References ===== | ===== References ===== | ||
| - | Falahi Charkhabi N, Booher NJ, Peng Z, Wang L, Rahimian H, Shams-Bakhsh M, Liu Z, Liu S, White FF, Bogdanove AJ (2017). Complete genome sequencing and targeted mutagenesis reveal virulence vontributions of Tal2 and Tal4b of // | + | Falahi Charkhabi N, Booher NJ, Peng Z, Wang L, Rahimian H, Shams-Bakhsh M, Liu Z, Liu S, White FF, Bogdanove AJ (2017). Complete genome sequencing and targeted mutagenesis reveal virulence vontributions of Tal2 and Tal4b of // |
| + | |||
| + | Nimchuk ZL, Fisher EJ, Desvaux D, Chang JH, Dangl JL (2007). The HopX (AvrPphE) family of // | ||
| + | |||
| + | Peng Z, Hu Y, Xie J, Potnis N, Akhunova A, Jones J, Liu Z, White F, Liu S (2016). Long read and single molecule DNA sequencing simplifies genome assembly and TAL effector gene analysis of // | ||
| - | Nimchuk ZL, Fisher EJ, Desvaux D, Chang JH, Dangl JL (2007). The HopX (AvrPphE) family of // | + | ===== Acknowledgements ===== |
| - | Peng Z, Hu Y, Xie J, Potnis N, Akhunova A, Jones J, Liu Z, White F, Liu S (2016). Long read and single molecule DNA sequencing simplifies genome assembly and TAL effector gene analysis of // | + | This fact sheet is based upon work from COST Action CA16107 EuroXanth, supported by COST (European Cooperation in Science and Technology). |
bacteria/t3e/xope5.1587504219.txt.gz · Last modified: 2023/01/09 10:20 (external edit)
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