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--- bacteria:t3e:xope4 [2023/01/09 10:20] – external edit 127.0.0.1
+++ bacteria:t3e:xope4 [2025/02/12 23:56] (current) – jfpothier
@@ Line 1: / Line 1: @@
-====== XopE4 ======
+====== The Type III Effector XopE4 from //Xanthomonas// ======
 Author: [[https://www.researchgate.net/profile/Jaime_Cubero|Jaime Cubero]]\\
@@ Line 8: / Line 8: @@
 Family: XopE4\\
 Prototype: XAUC_31730 (//Xanthomonas fuscans// pv. //aurantifolii//)\\
-Protein Accession ID: [[https://www.ncbi.nlm.nih.gov/protein/EFF46466.1|EFF46466.1]] (388 aa)\\
+GenBank ID: [[https://www.ncbi.nlm.nih.gov/protein/EFF46466.1|EFF46466.1]] (388 aa - likely too long)\\
+RefSeq ID: [[https://www.ncbi.nlm.nih.gov/protein/WP_244170787.1|WP_244170787.1]] (367 aa)\\
 D structure: unknown
@@ Line 43: / Line 44: @@
 Yes (//e.g.//, //X. axonopodis//).
-XopE4 is also present in //X. fragariae // (Vandroemme// et al//., 2013) and it is not very conserved among //X. perforans// strains (Schwartz //et al//., 2015).
+XopE4 is also present in //X. fragariae // (Vandroemme //et al//., 2013) and it is not very conserved among //X. perforans// strains (Schwartz //et al//., 2015).
 === In other plant pathogens/symbionts ===
@@ Line 58: / Line 59: @@
 Nimchuk ZL, Fisher EJ, Desvaux D, Chang JH, Dangl JL (2007). The HopX (AvrPphE) family of //Pseudomonas syringae// type III effectors require a catalytic triad and a novel N-terminal domain forfunction. Mol. Plant Microbe Interact. 20: 346-357. DOI: [[https://doi.org/10.1094/MPMI-20-4-0346|10.1094/MPMI-20-4-0346]].
-Schwartz, A. R., Potnis, N., Timilsina, S., Wilson, M., Patané, J., Martins Jr, J., & Vallad, G. E. (2015). Phylogenomics of Xanthomonas field strains infecting pepper and tomato reveals diversity in effector repertoires and identifies determinants of host specificity. Frontiers in Microbiology, 6, 535. DOI: [[https://doi.org/10.3389/fmicb.2015.00535|10.3389/fmicb.2015.00535]]
+Schwartz, A. R., Potnis, N., Timilsina, S., Wilson, M., Patané, J., Martins Jr, J., & Vallad, G. E. (2015). Phylogenomics of //Xanthomonas// field strains infecting pepper and tomato reveals diversity in effector repertoires and identifies determinants of host specificity. Front. Microbiol. 6: 535. DOI: [[https://doi.org/10.3389/fmicb.2015.00535|10.3389/fmicb.2015.00535]]
-Vandroemme, J., Cottyn, B., Baeyen, S., De Vos, P., & Maes, M. (2013). Draft genome sequence of //Xanthomonas fragariae// reveals reductive evolution and distinct virulence-related gene content. BMC genomics, //14// (1), 829. DOI: [[https://doi.org/10.1186/1471-2164-14-829|10.1186/1471-2164-14-829 ]]
+Vandroemme, J., Cottyn, B., Baeyen, S., De Vos, P., & Maes, M. (2013). Draft genome sequence of //Xanthomonas fragariae// reveals reductive evolution and distinct virulence-related gene content. BMC Genomics 14: 829. DOI: [[https://doi.org/10.1186/1471-2164-14-829|10.1186/1471-2164-14-829 ]]
+===== Acknowledgements =====
+This fact sheet is based upon work from COST Action CA16107 EuroXanth, supported by COST (European Cooperation in Science and Technology).

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