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bacteria:t3e:xopat [2023/05/31 07:33] – [XopAT] rkoebnikbacteria:t3e:xopat [2025/11/05 17:39] (current) – jfpothier
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-====== XopAT ======+====== The Type III Effector XopAT from //Xanthomonas// ======
  
-Author: John Doe\\ +Author: [[https://www.researchgate.net/profile/Ralf-Koebnik|Ralf Koebnik]]\\
-Reviewer: Jane Doe+
  
 Class: XopAT\\ Class: XopAT\\
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 Prototype: XCR_1464a (//Xanthomonas campestris// pv. //raphani//; strain 756C)\\ Prototype: XCR_1464a (//Xanthomonas campestris// pv. //raphani//; strain 756C)\\
 GenBank ID: [[https://www.ncbi.nlm.nih.gov/protein/AEL06363.1|AEL06363.1 ]] (211 aa)\\ GenBank ID: [[https://www.ncbi.nlm.nih.gov/protein/AEL06363.1|AEL06363.1 ]] (211 aa)\\
-RefSeq ID: [[https://www.ncbi.nlm.nih.gov/protein/WP_148263049.1|WP_148263049.1]] (155 aa)\\+RefSeq ID: [[https://www.ncbi.nlm.nih.gov/protein/WP_148263049.1|WP_148263049.1]] (155 aa, probably too short)\\
 3D structure: Unknown 3D structure: Unknown
  
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 === How discovered? === === How discovered? ===
 +
 +//xopAT// was predicted as a novel type 3 effector (T3E) gene because of four criteria (Bogdanove //et al.//, 2011):
 +
 +  - The gene is encoded next to the //hrp// gene cluster.
 +  - The gene contains a plant-inducible promoter (PIP) box and a properly positioned -10 box-like sequence upstream of the coding sequence.
 +  - Like other T3E genes, //xopAT// has an unusual (low) G+C content suggestive of acquisition by horizontal gene transfer.
 +  - In common with other T3Es, the encoded protein contains eukaryotic motifs for myristoylation and palmitoylation.
  
 === (Experimental) evidence for being a T3E === === (Experimental) evidence for being a T3E ===
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 === In xanthomonads === === In xanthomonads ===
  
 +Yes (//X. arboricola//, //X. campestris//, //X. codiaei//, //X. cucurbitae//, //X. fragariae//, //X. hortorum//)
 === In other plant pathogens/symbionts === === In other plant pathogens/symbionts ===
 +
 +No
  
 ===== References ===== ===== References =====
bacteria/t3e/xopat.1685514806.txt.gz · Last modified: 2023/05/31 07:33 by rkoebnik

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