bacteria:t3e:xopat
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| bacteria:t3e:xopat [2023/05/31 07:33] – [XopAT] rkoebnik | bacteria:t3e:xopat [2025/02/12 23:43] (current) – jfpothier | ||
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| - | ====== XopAT ====== | + | ====== |
| - | Author: | + | Author: |
| - | Reviewer: Jane Doe | + | |
| Class: XopAT\\ | Class: XopAT\\ | ||
| Line 8: | Line 7: | ||
| Prototype: XCR_1464a (// | Prototype: XCR_1464a (// | ||
| GenBank ID: [[https:// | GenBank ID: [[https:// | ||
| - | RefSeq ID: [[https:// | + | RefSeq ID: [[https:// |
| 3D structure: Unknown | 3D structure: Unknown | ||
| Line 14: | Line 13: | ||
| === How discovered? === | === How discovered? === | ||
| + | |||
| + | //xopAT// was predicted as a novel type 3 effector (T3E) gene because of four criteria (Bogdanove //et al.//, 2011): | ||
| + | |||
| + | - The gene is encoded next to the //hrp// gene cluster. | ||
| + | - The gene contains a plant-inducible promoter (PIP) box and a properly positioned -10 box-like sequence upstream of the coding sequence. | ||
| + | - Like other T3E genes, //xopAT// has an unusual (low) G+C content suggestive of acquisition by horizontal gene transfer. | ||
| + | - In common with other T3Es, the encoded protein contains eukaryotic motifs for myristoylation and palmitoylation. | ||
| === (Experimental) evidence for being a T3E === | === (Experimental) evidence for being a T3E === | ||
| Line 31: | Line 37: | ||
| === In xanthomonads === | === In xanthomonads === | ||
| + | Yes (//X. arboricola//, | ||
| === In other plant pathogens/ | === In other plant pathogens/ | ||
| + | |||
| + | No | ||
| ===== References ===== | ===== References ===== | ||
bacteria/t3e/xopat.1685514806.txt.gz · Last modified: 2023/05/31 07:33 by rkoebnik
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