bacteria:t3e:xopat
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| bacteria:t3e:xopat [2020/07/09 10:44] – created rkoebnik | bacteria:t3e:xopat [2025/02/12 23:43] (current) – jfpothier | ||
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| - | ====== | + | ====== |
| - | Author: | + | Author: |
| - | Reviewer: Jane Doe | + | |
| - | Class: | + | Class: |
| - | Family: | + | Family: |
| - | Prototype: | + | Prototype: |
| - | RefSeq ID:\\ | + | GenBank ID: [[https:// |
| + | RefSeq ID: [[https:// | ||
| 3D structure: Unknown | 3D structure: Unknown | ||
| Line 13: | Line 13: | ||
| === How discovered? === | === How discovered? === | ||
| + | |||
| + | //xopAT// was predicted as a novel type 3 effector (T3E) gene because of four criteria (Bogdanove //et al.//, 2011): | ||
| + | |||
| + | - The gene is encoded next to the //hrp// gene cluster. | ||
| + | - The gene contains a plant-inducible promoter (PIP) box and a properly positioned -10 box-like sequence upstream of the coding sequence. | ||
| + | - Like other T3E genes, //xopAT// has an unusual (low) G+C content suggestive of acquisition by horizontal gene transfer. | ||
| + | - In common with other T3Es, the encoded protein contains eukaryotic motifs for myristoylation and palmitoylation. | ||
| === (Experimental) evidence for being a T3E === | === (Experimental) evidence for being a T3E === | ||
| Line 30: | Line 37: | ||
| === In xanthomonads === | === In xanthomonads === | ||
| + | Yes (//X. arboricola//, | ||
| === In other plant pathogens/ | === In other plant pathogens/ | ||
| + | |||
| + | No | ||
| ===== References ===== | ===== References ===== | ||
| + | |||
| + | Bogdanove AJ, Koebnik R, Lu H, Furutani A, Angiuoli SV, Patil PB, Van Sluys MA, Ryan RP, Meyer DF, Han SW, Aparna G, Rajaram M, Delcher AL, Phillippy AM, Puiu D, Schatz MC, Shumway M, Sommer DD, Trapnell C, Benahmed F, Dimitrov G, Madupu R, Radune D, Sullivan S, Jha G, Ishihara H, Lee SW, Pandey A, Sharma V, Sriariyanun M, Szurek B, Vera-Cruz CM, Dorman KS, Ronald PC, Verdier V, Dow JM, Sonti RV, Tsuge S, Brendel VP, Rabinowicz PD, Leach JE, White FF, Salzberg SL (2011). Two new complete genome sequences offer insight into host and tissue specificity of plant pathogenic // | ||
bacteria/t3e/xopat.1594287896.txt.gz · Last modified: 2023/01/09 10:20 (external edit)
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