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--- bacteria:t3e:xopas [2020/07/09 13:10] – [References] rkoebnik
+++ bacteria:t3e:xopas [2024/12/16 14:47] (current) – [The Type III Effector XopAS from //Xanthomonas//] rkoebnik
@@ Line 1: / Line 1: @@
-====== XopAS ======
+====== The Type III Effector XopAS from //Xanthomonas// ======
-Author: John Doe\\
+Author: [[https://www.researchgate.net/profile/Ralf-Koebnik|Ralf Koebnik]]
-Reviewer: Jane Doe
 Class: XopAS\\
 Family: XopAS\\
-Prototype: Xop? (//Xanthomonas//; strain)\\
+Prototype: XGA_0764/0765 (//Xanthomonas hortorum// pv. //gardneri//, ex. //Xanthomonas gardneri//; strain 101 = ATCC 19865)\\
-RefSeq ID:\\
+GenBank ID (XGA_0764): [[https://www.ncbi.nlm.nih.gov/protein/EGD20560.1|EGD20560.1]] (601 aa)\\
+GenBank ID (XGA_0765): [[https://www.ncbi.nlm.nih.gov/protein/EGD20561.1|EGD20561.1]] (772 aa)\\
+RefSeq ID: [[https://www.ncbi.nlm.nih.gov/protein/WP_229015407.1|WP_229015407.1]] (1375 aa)\\
 D structure: Unknown
@@ Line 14: / Line 15: @@
 === How discovered? ===
+XopAS was predicted to be a type 3 effector based on homology to HopAS1, a type 3 effector from //Pseudomonas syringae//. However, XopAS of strain 101 appears to be separated into two ORFs XGA_0764 and XGA_0765 by internal stop codon (Potnis //et al.//, 2011).
 === (Experimental) evidence for being a T3E ===

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