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--- bacteria:t3e:xopas [2020/07/09 10:44] – created rkoebnik
+++ bacteria:t3e:xopas [2024/12/16 14:47] (current) – [The Type III Effector XopAS from //Xanthomonas//] rkoebnik
@@ Line 1: / Line 1: @@
-====== XopAA ======
+====== The Type III Effector XopAS from //Xanthomonas// ======
-Author: John Doe\\
+Author: [[https://www.researchgate.net/profile/Ralf-Koebnik|Ralf Koebnik]]
-Reviewer: Jane Doe
-Class: XopAA\\
+Class: XopAS\\
-Family: XopAA\\
+Family: XopAS\\
-Prototype: Xop? (//Xanthomonas//; strain)\\
+Prototype: XGA_0764/0765 (//Xanthomonas hortorum// pv. //gardneri//, ex. //Xanthomonas gardneri//; strain 101 = ATCC 19865)\\
-RefSeq ID:\\
+GenBank ID (XGA_0764): [[https://www.ncbi.nlm.nih.gov/protein/EGD20560.1|EGD20560.1]] (601 aa)\\
+GenBank ID (XGA_0765): [[https://www.ncbi.nlm.nih.gov/protein/EGD20561.1|EGD20561.1]] (772 aa)\\
+RefSeq ID: [[https://www.ncbi.nlm.nih.gov/protein/WP_229015407.1|WP_229015407.1]] (1375 aa)\\
 D structure: Unknown
@@ Line 14: / Line 15: @@
 === How discovered? ===
+XopAS was predicted to be a type 3 effector based on homology to HopAS1, a type 3 effector from //Pseudomonas syringae//. However, XopAS of strain 101 appears to be separated into two ORFs XGA_0764 and XGA_0765 by internal stop codon (Potnis //et al.//, 2011).
 === (Experimental) evidence for being a T3E ===
@@ Line 33: / Line 35: @@
 ===== References =====
+Potnis N, Krasileva K, Chow V, Almeida NF, Patil PB, Ryan RP, Sharlach M, Behlau F, Dow JM, Momol M, White FF, Preston JF, Vinatzer BA, Koebnik R, Setubal JC, Norman DJ, Staskawicz BJ, Jones JB (2011). Comparative genomics reveals diversity among xanthomonads infecting tomato and pepper. BMC Genomics 12: 146. DOI: [[https://doi.org/10.1186/1471-2164-12-146|10.1186/1471-2164-12-146]]

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