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--- bacteria:t3e:xopan [2023/10/04 17:21] – [Conservation] rkoebnik
+++ bacteria:t3e:xopan [2025/02/12 23:35] (current) – jfpothier
@@ Line 1: / Line 1: @@
-====== XopAN (replaced by XopAV) ======
+====== The Type III Effector XopAN from //Xanthomonas// (replaced by XopAV) ======
-Author: [[https://www.researchgate.net/profile/Ralf-Koebnik|Ralf Koebnik]]\\
+Author: [[https://www.researchgate.net/profile/Ralf-Koebnik|Ralf Koebnik]]
-Internal reviewer:\\
-Expert reviewer:
 Class: XopAN\\
 Family: XopAN\\
-Prototype: XopAN (//Xanthomonas//; strain)\\
+Prototype: XopAN (//Xanthomonas campestris// pv. //campestris//)\\
-GenBank ID:\\
-RefSeq ID:\\
 D structure: Unknown
@@ Line 16: / Line 12: @@
 === How discovered? ===
-XopAN was originally reserved for a type 3 effector from //X. campestris// pv. //campestris//, which turned out to be related to [[https://www.ncbi.nlm.nih.gov/protein/AAY50220.1|XC_3176]], a protein that was identified as a type 3 effector and nominated XopAY (see below; Yang et al., 2015). The N-terminal portion of XC_3176 is similar to XCV1197 and the C-terminal portion is similar to XCV1198. XCV1197 was shown to contain a type 3 secretion signal and was called XopAV, now classified as XopAV1 (Teper et al., 2016 ), whereas XC_3176 was classified as XopAV2.
+XopAN was originally reserved for a type 3 effector from //X. campestris// pv. //campestris//, which turned out to be related to [[https://www.ncbi.nlm.nih.gov/protein/AAY50220.1|XC_3176]], a protein that was identified as a type 3 effector and nominated XopAY (see below; Yang et al., 2015). The N-terminal portion of [[https://www.ncbi.nlm.nih.gov/protein/AAY50220.1|XC_3176]] is similar to [[https://www.ncbi.nlm.nih.gov/protein/CAJ22828.1|XCV1197]] and the C-terminal portion is similar to [[https://www.ncbi.nlm.nih.gov/protein/CAJ22829.1|XCV1198]]. [[https://www.ncbi.nlm.nih.gov/protein/CAJ22828.1|XCV1197]] was shown to contain a type 3 secretion signal and was called [[:bacteria:t3e:xopav|XopAV]], now classified as XopAV1 (Teper et al., 2016 ), whereas XC_3176 was classified as XopAV2. For more information, see also [[:bacteria:t3e:xopay|XopAY]].
 === (Experimental) evidence for being a T3E ===
-The promoter and signal region of XC_3176 were fused to the HR-inducing AvrBs1 C-terminal domain lack of 58 N-terminal amino acid residues. This construct elicited an hypersensitive response on the pepper ECW-10R containing the corresponding resistance gene// Bs1// in a //hrcV//-dependent manner (Yang //et al.//, 2015).
+The promoter and signal region of XC_3176 were fused to the HR-inducing AvrBs1 C-terminal domain lack of 58 N-terminal amino acid residues. This construct elicited an hypersensitive response on the pepper ECW-10R containing the corresponding resistance gene //Bs1// in a //hrcV//-dependent manner (Yang //et al.//, 2015).
 === Regulation ===
@@ Line 49: / Line 45: @@
 ===== References =====
+Teper D, Burstein D, Salomon D, Gershovitz M, Pupko T, Sessa G (2016). Identification of novel //Xanthomonas euvesicatoria// type III effector proteins by a machine-learning approach. Mol. Plant Pathol. 17: 398-411. DOI: [[https://doi.org/10.1111/mpp.12288|10.1111/mpp.12288]]
+Yang L, Su H, Yang F, Jian H, Zhou M, Jiang W, Jiang B (2015). Identification of a new type III effector XC3176 in //Xanthomonas campestris// pv. //campestris//. Wei Sheng Wu Xue Bao 55: 1264-1272. PubMed ID: [[https://pubmed.ncbi.nlm.nih.gov/26939454/|26939454]]. Article in Chinese.

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