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bacteria:t3e:xopal1 [2020/07/06 17:27] – [Conservation] joana_costabacteria:t3e:xopal1 [2025/02/12 23:34] (current) – jfpothier
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-====== XopAL1 ======+====== The Type III Effector XopAL1 from //Xanthomonas// ======
  
 Author: [[https://www.researchgate.net/profile/Matthieu_Arlat|Matthieu Arlat]]\\ Author: [[https://www.researchgate.net/profile/Matthieu_Arlat|Matthieu Arlat]]\\
-Internal reviewer: Joana Costa\\ +Internal reviewer: [[https://www.researchgate.net/profile/Joana_Costa12|Joana Costa]]
-Expert reviewer: FIXME+
  
 Class: XopAL\\ Class: XopAL\\
 Family: XopAL1\\ Family: XopAL1\\
-Prototype: XopAL (//Xanthomonas// campestris pv. //campestris// 8004, gene //XC_2995; xopXccE1//; Jiang //et al//., 2009)\\ +Prototype: XC_2995/XopXccE1 (//Xanthomonas campestris// pv. //campestris//; strain 8004) (Jiang //et al.//, 2009)\\ 
-RefSeq ID: [[https://www.ncbi.nlm.nih.gov/protein/AAY50043.1|AAY50043.1]] (332 aa)\\+GenBank ID: [[https://www.ncbi.nlm.nih.gov/protein/AAY50043.1|AAY50043.1]] (332 aa)\\ 
 +RefSeq ID: [[https://www.ncbi.nlm.nih.gov/protein/WP_274360846.1|WP_274360846.1]] (305 aa)\\
 3D structure: Unknown 3D structure: Unknown
  
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 === In xanthomonads === === In xanthomonads ===
  
-Yes, //X. campestris//, //X. translucens, X. arboricola (//Cesbron// et al., 2015)//+Yes, //X. campestris//, //X. translucens//, //X. arboricola// (Cesbron //et al//., 2015)
 === In other plant pathogens/symbionts === === In other plant pathogens/symbionts ===
  
 //Acidovorax// spp., //Ralstonia solanacearum// (RipE2; Peeters //et al//., 2013), //Erwinia amylovora// (Eop3; Nissinen //et al//., 2007, HopX1<sub>Ea</sub>; Bocsanczy //et al//., 2012), //Pseudomonas// spp. //Acidovorax// spp., //Ralstonia solanacearum// (RipE2; Peeters //et al//., 2013), //Erwinia amylovora// (Eop3; Nissinen //et al//., 2007, HopX1<sub>Ea</sub>; Bocsanczy //et al//., 2012), //Pseudomonas// spp.
- 
 ===== References ===== ===== References =====
  
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 Bogdanove AJ, Koebnik R, Lu H, Furutani A, Angiuoli SV, Patil PB, Van Sluys MA, Ryan RP, Meyer DF, Han SW, Aparna G, Rajaram M, Delcher AL, Phillippy AM, Puiu D, Schatz MC, Shumway M, Sommer DD, Trapnell C, Benahmed F, Dimitrov G, Madupu R, Radune D, Sullivan S, Jha G, Ishihara H, Lee SW, Pandey A, Sharma V, Sriariyanun M, Szurek B, Vera-Cruz CM, Dorman KS, Ronald PC, Verdier V, Dow JM, Sonti RV, Tsuge S, Brendel VP, Rabinowicz PD, Leach JE, White FF, Salzberg SL (2011). Two new complete genome sequences offer insight into host and tissue specificity of plant pathogenic //Xanthomonas// spp. J. Bacteriol. 193: 5450-64. DOI: [[https://doi.org/10.1128/JB.05262-11|10.1128/JB.05262-11]] Bogdanove AJ, Koebnik R, Lu H, Furutani A, Angiuoli SV, Patil PB, Van Sluys MA, Ryan RP, Meyer DF, Han SW, Aparna G, Rajaram M, Delcher AL, Phillippy AM, Puiu D, Schatz MC, Shumway M, Sommer DD, Trapnell C, Benahmed F, Dimitrov G, Madupu R, Radune D, Sullivan S, Jha G, Ishihara H, Lee SW, Pandey A, Sharma V, Sriariyanun M, Szurek B, Vera-Cruz CM, Dorman KS, Ronald PC, Verdier V, Dow JM, Sonti RV, Tsuge S, Brendel VP, Rabinowicz PD, Leach JE, White FF, Salzberg SL (2011). Two new complete genome sequences offer insight into host and tissue specificity of plant pathogenic //Xanthomonas// spp. J. Bacteriol. 193: 5450-64. DOI: [[https://doi.org/10.1128/JB.05262-11|10.1128/JB.05262-11]]
  
-Cesbron S, Briand M, Essakhi S, Gironde S, Boureau T, Manceau C, Saux MF, Jacques MA (2015). Comparative genomics of pathogenic and nonpathogenic strains of //Xanthomonas arboricola// unveil molecular and evolutionary events linked to pathoadaptation. Front. Plant Sci. 6:1126. [[http://10.3389/fpls.2015.01126|http://10.3389/fpls.2015.01126]]+Cesbron S, Briand M, Essakhi S, Gironde S, Boureau T, Manceau C, Saux MF, Jacques MA (2015). Comparative genomics of pathogenic and nonpathogenic strains of //Xanthomonas arboricola// unveil molecular and evolutionary events linked to pathoadaptation. Front. Plant Sci. 6:1126. DOI: [[http://doi.org/10.3389/fpls.2015.01126|10.3389/fpls.2015.01126]]
  
 Jiang W, Jiang BL, Xu RQ, Huang JD, Wei HY, Jiang GF, Cen WJ, Liu J, Ge YY, Li GH, Su LL, Hang XH, Tang DJ, Lu GT, Feng JX, He YQ, Tang JL (2009). Identification of six type III effector genes with the PIP box in //Xanthomonas campestris// pv. //campestris// and five of them contribute individually to full pathogenicity. Mol. Plant Microbe Interact. 22: 1401-1411. DOI: [[https://doi.org/10.1094/MPMI-22-11-1401|10.1094/MPMI-22-11-1401]] Jiang W, Jiang BL, Xu RQ, Huang JD, Wei HY, Jiang GF, Cen WJ, Liu J, Ge YY, Li GH, Su LL, Hang XH, Tang DJ, Lu GT, Feng JX, He YQ, Tang JL (2009). Identification of six type III effector genes with the PIP box in //Xanthomonas campestris// pv. //campestris// and five of them contribute individually to full pathogenicity. Mol. Plant Microbe Interact. 22: 1401-1411. DOI: [[https://doi.org/10.1094/MPMI-22-11-1401|10.1094/MPMI-22-11-1401]]
  
-Nissinen RM, Ytterberg AJ, Bogdanove AJ, VAN Wijk KJ, Beer SV (2007). Analyses of the secretomes of //Erwinia amylovora// and selected hrp mutants reveal novel type III secreted proteins and an effect of HrpJ on extracellular harpin levels. Mol. Plant Pathol. 8:55-67. DOI: [[https://doi.org/10.1111/j.1364-3703.2006.00370.x|10.1111/j.1364-3703.2006.00370.x]]+Nissinen RM, Ytterberg AJ, Bogdanove AJ, VAN Wijk KJ, Beer SV (2007). Analyses of the secretomes of //Erwinia amylovora// and selected hrp mutants reveal novel type III secreted proteins and an effect of HrpJ on extracellular harpin levels. Mol. Plant Pathol. 8: 55-67. DOI: [[https://doi.org/10.1111/j.1364-3703.2006.00370.x|10.1111/j.1364-3703.2006.00370.x]]
  
 Peeters N, Carrère S, Anisimova M, Plener L, Cazalé AC, Genin S (2013). Repertoire, unified nomenclature and evolution of the Type III effector gene set in the //Ralstonia solanacearum// species complex. BMC Genomics 14: 859. DOI: [[https://doi.org/10.1186/1471-2164-14-859|10.1186/1471-2164-14-859]] Peeters N, Carrère S, Anisimova M, Plener L, Cazalé AC, Genin S (2013). Repertoire, unified nomenclature and evolution of the Type III effector gene set in the //Ralstonia solanacearum// species complex. BMC Genomics 14: 859. DOI: [[https://doi.org/10.1186/1471-2164-14-859|10.1186/1471-2164-14-859]]
  
 Roux B, Bolot S, Guy E, Denancé N, Lautier M, Jardinaud MF, Fischer-Le Saux M, Portier P, Jacques MA, Gagnevin L, Pruvost O, Lauber E, Arlat M, Carrère S, Koebnik R, Noël LD (2015). Genomics and transcriptomics of //Xanthomonas campestris// species challenge the concept of core type III effectome. BMC Genomics 16: 975. DOI: [[https://doi.org/10.1186/s12864-015-2190-0|10.1186/s12864-015-2190-0]] Roux B, Bolot S, Guy E, Denancé N, Lautier M, Jardinaud MF, Fischer-Le Saux M, Portier P, Jacques MA, Gagnevin L, Pruvost O, Lauber E, Arlat M, Carrère S, Koebnik R, Noël LD (2015). Genomics and transcriptomics of //Xanthomonas campestris// species challenge the concept of core type III effectome. BMC Genomics 16: 975. DOI: [[https://doi.org/10.1186/s12864-015-2190-0|10.1186/s12864-015-2190-0]]
 +
 +===== Acknowledgements =====
 +
 +This fact sheet is based upon work from COST Action CA16107 EuroXanth, supported by COST (European Cooperation in Science and Technology).
  
bacteria/t3e/xopal1.1594052858.txt.gz · Last modified: 2023/01/09 10:20 (external edit)

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