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bacteria:t3e:software [2023/07/17 11:00] – [References] rkoebnikbacteria:t3e:software [2023/09/11 17:32] (current) – [References] rkoebnik
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 |EffectiveT3 |T3E prediction |[[http://www.effectors.org|www.effectors.org]] |Arnold //et al.//, 2009  | |EffectiveT3 |T3E prediction |[[http://www.effectors.org|www.effectors.org]] |Arnold //et al.//, 2009  |
 |SIEVE |T3E prediction |[[http://www.sysbep.org/sieve/|www.sysbep.org/sieve/]] **(outdated)**   |Samudrala //et al.//, 2009; McDermott //et al.//, 2011  | |SIEVE |T3E prediction |[[http://www.sysbep.org/sieve/|www.sysbep.org/sieve/]] **(outdated)**   |Samudrala //et al.//, 2009; McDermott //et al.//, 2011  |
 +|//Pseudomonas//–Plant Interaction website  |T3E database |[[http://www.pseudomonas-syringae.org|www.pseudomonas-syringae.org]] |Lindeberg //et al.//, 2005  |
  
 ===== References ===== ===== References =====
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 Li J, Wei L, Guo F, Zou Q (2020b). EP3: an ensemble predictor that accurately identifies type III secreted effectors. Brief. Bioinform., in press (bbaa008). DOI: [[https://doi.org/10.1093/bib/bbaa008|10.1093/bib/bbaa008]] Li J, Wei L, Guo F, Zou Q (2020b). EP3: an ensemble predictor that accurately identifies type III secreted effectors. Brief. Bioinform., in press (bbaa008). DOI: [[https://doi.org/10.1093/bib/bbaa008|10.1093/bib/bbaa008]]
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 +Lindeberg M, Stavrinides J, Chang JH, Alfano JR, Collmer A, Dangl JL, Greenberg JT, Mansfield JW, Guttman DS (2005). Proposed guidelines for a unified nomenclature and phylogenetic analysis of type III Hop effector proteins in the plant pathogen //Pseudomonas syringae//. Mol. Plant Microbe Interact. 18: 275-282. DOI: [[https://doi.org/10.1094/MPMI-18-0275|10.1094/MPMI-18-0275]]
  
 Löwer M, Schneider G (2009). Prediction of type III secretion signals in genomes of gram-negative bacteria. PLoS One 4: e5917. DOI: [[https://doi.org/10.1371/journal.pone.0005917|10.1371/journal.pone.0005917]]. Erratum in: PLoS One (2009); 4. DOI: [[https://doi.org/10.1371/annotation/78c8fc32-b1e2-4c87-9c92-d318af980b9b|10.1371/annotation/78c8fc32-b1e2-4c87-9c92-d318af980b9b]] Löwer M, Schneider G (2009). Prediction of type III secretion signals in genomes of gram-negative bacteria. PLoS One 4: e5917. DOI: [[https://doi.org/10.1371/journal.pone.0005917|10.1371/journal.pone.0005917]]. Erratum in: PLoS One (2009); 4. DOI: [[https://doi.org/10.1371/annotation/78c8fc32-b1e2-4c87-9c92-d318af980b9b|10.1371/annotation/78c8fc32-b1e2-4c87-9c92-d318af980b9b]]
bacteria/t3e/software.1689588013.txt.gz · Last modified: 2023/07/17 11:00 by rkoebnik

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