This shows you the differences between two versions of the page.
Both sides previous revisionPrevious revisionNext revision | Previous revision | ||
bacteria:t3e:avrbs2 [2020/07/13 12:30] – [References] rkoebnik | bacteria:t3e:avrbs2 [2025/07/24 22:10] (current) – jfpothier | ||
---|---|---|---|
Line 1: | Line 1: | ||
- | ====== AvrBs2 ====== | + | ====== |
Author: [[https:// | Author: [[https:// | ||
Internal reviewer: [[https:// | Internal reviewer: [[https:// | ||
- | Expert reviewer: FIXME | ||
Class: AvrBs2\\ | Class: AvrBs2\\ | ||
Protein family: AvrBs2\\ | Protein family: AvrBs2\\ | ||
- | Prototype: AvrBs2 (// | + | Prototype: AvrBs2 (// |
- | RefSeq | + | GenBank |
- | Synonym: //avrRxc1/3// (Ignatov //et al.//, 2002)\\ | + | RefSeq ID: [[https://www.ncbi.nlm.nih.gov/protein/WP_039418336.1|WP_039418336.1]] (729 aa)\\ |
+ | Synonym: AvrRxc1/3 (Ignatov //et al.//, 2002)\\ | ||
3D structure: Unknown | 3D structure: Unknown | ||
Line 17: | Line 17: | ||
Indirectly – the pathovars that induced // | Indirectly – the pathovars that induced // | ||
+ | |||
=== (Experimental) evidence for being a T3E === | === (Experimental) evidence for being a T3E === | ||
Line 24: | Line 25: | ||
Once the effector domain of AvrBs2 that is recognized by //Bs2// pepper plants was identified (Mudgett //et al.//, 2000), this knowledge was used to construct a Tn// | Once the effector domain of AvrBs2 that is recognized by //Bs2// pepper plants was identified (Mudgett //et al.//, 2000), this knowledge was used to construct a Tn// | ||
+ | |||
=== Regulation === | === Regulation === | ||
Transcriptome analysis (RNA-seq) and qRT-PCR have shown that //avrBs2// gene expression is downregulated in a //X. citri// pv. //citri// Δ//phoP// mutant, indicating that PhoP is a positive regulator of //avrBs2// expression (Wei //et al//., 2019). | Transcriptome analysis (RNA-seq) and qRT-PCR have shown that //avrBs2// gene expression is downregulated in a //X. citri// pv. //citri// Δ//phoP// mutant, indicating that PhoP is a positive regulator of //avrBs2// expression (Wei //et al//., 2019). | ||
- | qRT-PCR revealed that transcript levels of 15 out of 18 tested non-TAL effector genes (as well as the regulatory genes //hrpG// and //hrpX//), including //avrBs2//, were significantly reduced in the // | + | qRT-PCR revealed that transcript levels of 15 out of 18 tested non-TAL effector genes (as well as the regulatory genes //hrpG// and //hrpX//), including //avrBs2//, were significantly reduced in the // |
=== Phenotypes === | === Phenotypes === | ||
- | * AvrBs2 has been demonstrated to be required for full virulence | + | * The loss of a functional |
- | * Recognition of // | + | * AvrBs2 has been demonstrated to be required for full virulence of //Xcv//, //X. oryzae// pv. // |
- | * It was shown in pepper and tomato lines without //Bs2 //that mutations of catalytic residues in the glycerolphosphodiesterase did not interfere with the ability of the plant to recognize AvrBs2 through the cognate R gene // | + | * Recognition of //AvrBs2// by OsHRL makes rice more resistant against //X. oryzae// pv. // |
- | * AvrBs2 contributes to //X. oryzae// | + | * It was shown in pepper and tomato lines without //Bs2// that mutations of catalytic residues in the glycerolphosphodiesterase did not interfere with the ability of the plant to recognize AvrBs2 through the cognate R gene //Bs2// and trigger disease resistance. This finding suggests that recognition of AvrBs2 is independent of its glycerolphosphodiesterase enzyme activity (Zhao //et al//., 2011). |
- | * AvrBs2 transiently expressed in // | + | * AvrBs2 contributes to //X. oryzae// pv. // |
+ | * AvrBs2 transiently expressed in // | ||
* Induced expression of AvrBs2 in transgenic cell cultures was shown to dramatically suppress flg22-induced and chitin-induced immune responses, such as ROS burst and PR gene expression (Li //et al//., 2015). | * Induced expression of AvrBs2 in transgenic cell cultures was shown to dramatically suppress flg22-induced and chitin-induced immune responses, such as ROS burst and PR gene expression (Li //et al//., 2015). | ||
- | * A ∆// | + | * A ∆//xopK// mutant strain of // |
+ | * XopN and AvrBS2 were shown to significantly contribute to virulence of //X. oryzae// pv. // | ||
=== Localization === | === Localization === | ||
- | The // | + | The //avrBs2// gene is chromosomal (Coplin, 1989). The AvrBs2 protein is translocated from bacterial cells into the plant cytosol. Subcellular localization of AvrBs2 was demonstrated using recombinant AvrBs2::GFP reporter fusions transiently expressed in rice protoplasts. Green fluorescence of AvrBs2::GFP was detected across the entire cell. Similar subcellular localization was observed in //Nicotiana benthamiana// |
=== Enzymatic function === | === Enzymatic function === | ||
Line 49: | Line 54: | ||
=== Interaction partners === | === Interaction partners === | ||
- | Gene-for-gene relationship with corresponding resistance gene // | + | Gene-for-gene relationship with corresponding resistance gene //Bs2// (Minsavage //et al//., 1990). Furthermore, |
===== Conservation ===== | ===== Conservation ===== | ||
Line 69: | Line 74: | ||
=== (Experimental) evidence for being a T3E === | === (Experimental) evidence for being a T3E === | ||
- | AvrBs2 fused to the calmodulin-activated adenylate cyclase domain was shown to translocate into plant cells (cytosol), detected through rise of cAMP levels inside the plant tissue. The // | + | AvrBs2 fused to the calmodulin-activated adenylate cyclase domain was shown to translocate into plant cells (cytosol), detected through rise of cAMP levels inside the plant tissue. The // |
=== Regulation === | === Regulation === | ||
- | qRT-PCR revealed that transcript levels of 15 out of 18 tested non-TAL effector genes (as well as the regulatory genes // | + | qRT-PCR revealed that transcript levels of 15 out of 18 tested non-TAL effector genes (as well as the regulatory genes //hrpG// and //hrpX//), including //avrBs2//, were significantly reduced in the // |
- | Transcriptome analysis (RNA-seq) and qRT-PCR have shown that // | + | Transcriptome analysis (RNA-seq) and qRT-PCR have shown that //avrBs2// gene expression is downregulated in a //X. citri// pv. //citri// Δ//phoP// mutant, indicating that PhoP is a positive regulator of //avrBs2// expression (Wei //et al//., 2019). |
=== Phenotypes === | === Phenotypes === | ||
- | * AvrBs2 has been demonstrated to be required for full virulence of //X. euvesicatoria// | + | * AvrBs2 has been demonstrated to be required for full virulence of //X. euvesicatoria// |
- | * Recognition of AvrBs2 by OsHRL makes rice more resistant against //X. oryzae// | + | * Recognition of AvrBs2 by OsHRL makes rice more resistant against //X. oryzae// pv. // |
- | * It was shown in pepper and tomato lines without //Bs2 //that mutations of catalytic residues in the glycerolphosphodiesterase did not interfere with the ability of the plant to recognize AvrBs2 through the cognate R gene // | + | * It was shown in pepper and tomato lines without //Bs2// that mutations of catalytic residues in the glycerolphosphodiesterase did not interfere with the ability of the plant to recognize AvrBs2 through the cognate R gene //Bs2// and trigger disease resistance. This finding suggests that recognition of AvrBs2 is independent of its glycerolphosphodiesterase enzyme activity (Zhao //et al//., 2011). |
- | * AvrBs2 contributes to //X. oryzae// | + | * AvrBs2 contributes to //X. oryzae// pv. // |
- | * AvrBs2 transiently expressed in // | + | * AvrBs2 transiently expressed in // |
* Induced expression of AvrBs2 in transgenic cell cultures was shown to dramatically suppress flg22-induced and chitin-induced immune responses, such as ROS burst and PR gene expression (Li //et al//., 2015). | * Induced expression of AvrBs2 in transgenic cell cultures was shown to dramatically suppress flg22-induced and chitin-induced immune responses, such as ROS burst and PR gene expression (Li //et al//., 2015). | ||
- | * A ∆// | + | * A ∆//xopK// mutant strain of // |
+ | * // | ||
=== Localization === | === Localization === | ||
- | The // | + | The //avrBs2// gene is chromosomal (Coplin, 1989). The AvrBs2 protein is translocated from bacterial cells into the plant cytosol. Subcellular localization of AvrBs2 was demonstrated using recombinant AvrBs2::GFP reporter fusions transiently expressed in rice protoplasts. Green fluorescence of AvrBs2::GFP was detected across the entire cell. Similar subcellular localization was observed in //Nicotiana benthamiana// |
=== Enzymatic function === | === Enzymatic function === | ||
Line 97: | Line 102: | ||
=== Interaction partners === | === Interaction partners === | ||
- | Gene-for-gene relationship with corresponding resistance gene // | + | Gene-for-gene relationship with corresponding resistance gene //Bs2// (Minsavage //et al//., 1990). Furthermore, |
===== Conservation ===== | ===== Conservation ===== | ||
Line 103: | Line 108: | ||
=== In xanthomonads === | === In xanthomonads === | ||
- | Yes (//e.g.//, //X//. // | + | Yes (//e.g.//, //X//. // |
+ | |||
+ | Field strains of //X//. // | ||
=== In other plant pathogens/ | === In other plant pathogens/ | ||
Line 116: | Line 123: | ||
Coplin DL (1989). Plasmids and their role in the evolution of plant pathogenic bacteria. Ann. Rev. Phytopathol. 27: 187-212. DOI: [[https:// | Coplin DL (1989). Plasmids and their role in the evolution of plant pathogenic bacteria. Ann. Rev. Phytopathol. 27: 187-212. DOI: [[https:// | ||
+ | |||
+ | Deb S, Ghosh P, Patel HK, Sonti RV (2020). Interaction of the // | ||
+ | |||
+ | Gassmann W, Dahlbeck D, Chesnokova O, Minsavage GV, Jones JB, Staskawicz BJ (2000). Molecular evolution of virulence in natural field strains of // | ||
Ghosh P (2004). Process of protein transport by the type III secretion system. Microbiol. Mol. Biol. Rev. 68: 771-795. DOI: [[https:// | Ghosh P (2004). Process of protein transport by the type III secretion system. Microbiol. Mol. Biol. Rev. 68: 771-795. DOI: [[https:// | ||
Line 121: | Line 132: | ||
Habyarimana F, Ahmer BM (2013). More evidence for secretion signals within the mRNA of type 3 secreted effectors. J. Bacteriol. 195: 2117-2118. DOI: [[https:// | Habyarimana F, Ahmer BM (2013). More evidence for secretion signals within the mRNA of type 3 secreted effectors. J. Bacteriol. 195: 2117-2118. DOI: [[https:// | ||
- | Ignatov AN, Monakhos GF, Dzhalilov FS, Pozmogova GV (2002). Avirulence gene from // | + | Ignatov AN, Monakhos GF, Dzhalilov FS, Pozmogova GV (2002). Avirulence gene from // |
Kearney B, Staskawicz BJ (1990). Widespread distribution and fitness contribution of // | Kearney B, Staskawicz BJ (1990). Widespread distribution and fitness contribution of // | ||
Li S, Wang Y, Wang S, Fang A, Wang J, Liu L, Zhang K, Mao Y, Sun W (2015). The type III effector AvrBs2 in // | Li S, Wang Y, Wang S, Fang A, Wang J, Liu L, Zhang K, Mao Y, Sun W (2015). The type III effector AvrBs2 in // | ||
+ | |||
+ | Liao ZX, Li JY, Mo XY, Ni Z, Jiang W, He YQ, Huang S (2020). Type III effectors //xopN// and //avrBS2// contribute to the virulence of // | ||
Liu Y, Long J, Shen D, Song C (2016). // | Liu Y, Long J, Shen D, Song C (2016). // | ||
Line 141: | Line 154: | ||
Roden JA, Belt B, Ross JB, Tachibana T, Vargas J, Mudgett MB (2004). A genetic screen to isolate type III effectors translocated into pepper cells during // | Roden JA, Belt B, Ross JB, Tachibana T, Vargas J, Mudgett MB (2004). A genetic screen to isolate type III effectors translocated into pepper cells during // | ||
- | Timilsina S, Abrahamian P, Potnis N, Minsavage GV, White FF, Staskawicz BJ, Jones JB, Vallad GE, Goss EM (2016). Analysis of sequenced genomes of Xanthomonas perforans identifies candidate targets for resistance breeding | + | Swords KM, Dahlbeck D, Kearney B, Roy M, Staskawicz BJ (1996). Spontaneous and induced mutations in a single open reading frame alter both virulence and avirulence |
Wei C, Ding T, Chang C, Yu C, Li X, Liu Q (2019). Global regulator PhoP is necessary for motility, biofilm formation, exoenzyme production and virulence of // | Wei C, Ding T, Chang C, Yu C, Li X, Liu Q (2019). Global regulator PhoP is necessary for motility, biofilm formation, exoenzyme production and virulence of // | ||
- | Wichmann G, Bergelson J (2004). Effector genes of // | + | Wichmann G, Bergelson J (2004). Effector genes of // |
- | Wichmann G, Ritchie D, Kousik CS, Bergelson J (2005). Reduced genetic variation occurs among genes of the highly clonal plant pathogen // | + | Wichmann G, Ritchie D, Kousik CS, Bergelson J (2005). Reduced genetic variation occurs among genes of the highly clonal plant pathogen // |
Zhao B, Dahlbeck D, Krasileva KV, Fong RW, Staskawicz BJ (2011). Computational and biochemical analysis of the // | Zhao B, Dahlbeck D, Krasileva KV, Fong RW, Staskawicz BJ (2011). Computational and biochemical analysis of the // | ||
Line 153: | Line 166: | ||
===== Further reading ===== | ===== Further reading ===== | ||
- | Gassmann W, Dahlbeck D, Chesnokova O, Minsavage GV, Jones JB, Staskawicz BJ (2000). Molecular evolution | + | Timilsina S, Abrahamian P, Potnis N, Minsavage GV, White FF, Staskawicz BJ, Jones JB, Vallad GE, Goss EM (2016). Analysis |
+ | |||
+ | ===== Acknowledgements ===== | ||
- | Swords KM, Dahlbeck D, Kearney B, Roy M, Staskawicz BJ (1996). Spontaneous and induced mutations | + | This fact sheet is based upon work from COST Action CA16107 EuroXanth, supported by COST (European Cooperation |