====== Type III effectors from //Xanthomonas// ======
[[http://www.biopred.net/xanthomonas/|Link to the original Xanthomonas //Resource @ xanthomonas.org]]
[[:bacteria:t3e:effectors|Multi-FASTA-formatted list of type III effectors from Xanthomonas]]
[[https://www.ncbi.nlm.nih.gov/protein/WP_011037255.1, WP_039418336.1, WP_011052943.1, WP_039417318.1, WP_011347616.1, WP_041183113.1, WP_228949438.1, WP_011345998.1, WP_011347479.1, WP_011052114.1, WP_244170787.1, WP_260607984.1, WP_011346095.1, WP_011348008.1, WP_039005675.1, WP_011346758.1, WP_011038360.1, WP_084217840.1, WP_011345706.1, WP_010377341.1, WP_011346406.1, WP_010367684.1, WP_011347382.1, WP_074052319.1, WP_011346137.1, WP_008572727.1, WP_228442257.1, WP_196765268.1, WP_027703763.1, WP_218498620.1, WP_011346113.1, WP_011348010.1, WP_011346566.1, WP_104613784.1, WP_011349176.1, WP_011260681.1, WP_039418869.1, WP_199285673.1, WP_011408937.1, WP_011409498.1, WP_228329674.1, WP_011346212.1, WP_011408080.1, WP_011259177.1, WP_039421390.1, WP_041855088.1, WP_011409110.1, WP_011269629.1, WP_011409710.1, WP_011050288.1, WP_008577605.1, WP_227479740.1, WP_272820829.1, WP_007970248.1, WP_011037263.1, WP_011052119.1, WP_014504815.1, WP_269466020.1, WP_274360846.1, WP_012437264.1, WP_012438997.1, WP_162267513.1, WP_236504155.1, WP_233366621.1, APO95022.1, WP_229015407.1, AEL06363.1, WP_041855031.1, WP_065628638.1, WP_011269951.1, WP_011348129.1, WP_041854960.1, WP_104549896.1, WP_227478587.1, WP_251761698.1, WP_145953988.1?report=fasta|List of type III effectors in Xanthomonas]] (for download from NCBI)
[[http://www.pseudomonas-syringae.org|Pseudomonas–Plant Interaction website]] (Lindeberg //et al.//, 2005)
[[https://iant.toulouse.inra.fr/T3E|RalstoT3Edb]] (Peeters //et al.//, 2013; Sabbagh //et al.//, 2019)
[[:bacteria:t3e:effector_reviews|Review papers on type III effectors]]
[[:bacteria:t3e:software|Software, databases and websites for type III effectors]]
[[:bacteria:t3e:t3e_template|Empty template]] - [[:bacteria:t3e:xopau|Example 1: XopAU]] - [[:bacteria:t3e:xopb|Example 2: XopB]]
===== Xanthomonas type III effectors =====
^ Class ^ Family ^ Synonyms ^ Related proteins ^ RefSeq ID (GenBank ID) ^ Function / Features ^
| AvrBs1 | [[:bacteria:t3e:avrbs1|AvrBs1]] | | AvrA | [[https://www.ncbi.nlm.nih.gov/protein/WP_011037255.1|WP_011037255.1]] | |
| AvrBs2 | [[:bacteria:t3e:avrbs2|AvrBs2]] | | | [[https://www.ncbi.nlm.nih.gov/protein/WP_039418336.1|WP_039418336.1]] | [[https://www.ebi.ac.uk/interpro/entry/InterPro/IPR030395/|Glycerophosphodiester phosphodiesterase domain]] |
| AvrBs3 | [[:bacteria:t3e:avrbs3|AvrBs3]] | PthA, PthB, PthN, PthXo, AvrXa7, AvrXa27, TALE | RipTAL | [[https://www.ncbi.nlm.nih.gov/protein/WP_011052943.1|WP_011052943.1]] | [[https://www.ebi.ac.uk/interpro/entry/InterPro/IPR005042/|TAL effector repeat]]; Transcription activator in eukaryotic host cell; Nuclear localization |
| XopB | [[:bacteria:t3e:xopb|XopB]] | | HopD1 (HopPtoD1, AvrPphD1), RipD | [[https://www.ncbi.nlm.nih.gov/protein/WP_039417318.1|WP_039417318.1]] | |
| XopC | [[:bacteria:t3e:xopc|XopC1]] | | RipC2 | [[https://www.ncbi.nlm.nih.gov/protein/WP_011347616.1|WP_011347616.1]] | [[https://www.ebi.ac.uk/interpro/entry/InterPro/IPR000836/|Phosphoribosyltransferase domain]]; [[https://www.ebi.ac.uk/interpro/entry/InterPro/IPR041492/|Haloacid dehalogenase-like hydrolase]] |
| XopC | [[:bacteria:t3e:xopc|XopC2]] | | RipC1 | [[https://www.ncbi.nlm.nih.gov/protein/WP_041183113.1|WP_041183113.1]] | |
| XopD | [[:bacteria:t3e:xopd|XopD]] | | | [[https://www.ncbi.nlm.nih.gov/protein/WP_228949438.1|WP_228949438.1]] | C48-family SUMO cysteine protease ([[https://www.ebi.ac.uk/interpro/entry/InterPro/IPR003653/|Ulp1 protease family]]); EAR motif; DNA binding; Nuclear localization |
| XopE | [[:bacteria:t3e:xope1|XopE1]] | AvrXacE1 | HopX (AvrPphE), RipE1 | [[https://www.ncbi.nlm.nih.gov/protein/WP_011345998.1|WP_011345998.1]] | Putative transglutaminase |
| XopE | [[:bacteria:t3e:xope2|XopE2]] | AvrXacE3, AvrXccE1 | HopX (AvrPphE), RipE1 | [[https://www.ncbi.nlm.nih.gov/protein/WP_011347479.1|WP_011347479.1]] | Putative transglutaminase |
| XopE | [[:bacteria:t3e:xope3|XopE3]] | AvrXacE2 | HopX (AvrPphE), RipE1 | [[https://www.ncbi.nlm.nih.gov/protein/WP_011052114.1|WP_011052114.1]] | Putative transglutaminase |
| XopE | [[:bacteria:t3e:xope4|XopE4]] | | RipE1 | [[https://www.ncbi.nlm.nih.gov/protein/WP_244170787.1|WP_244170787.1]] | Putative transglutaminase |
| XopE | [[:bacteria:t3e:xope5|XopE5]] | | HopX (AvrPphE), RipE1 | [[https://www.ncbi.nlm.nih.gov/protein/WP_260607984.1|WP_260607984.1]] | Putative transglutaminase |
| XopF | [[:bacteria:t3e:xopf|XopF1]] | Hpa4 | | [[https://www.ncbi.nlm.nih.gov/protein/WP_011346095.1|WP_011346095.1]] | |
| XopF | [[:bacteria:t3e:xopf|XopF2]] | | | [[https://www.ncbi.nlm.nih.gov/protein/WP_011348008.1|WP_011348008.1]] | |
| XopF | [[:bacteria:t3e:xopf|XopF3]] | | | [[https://www.ncbi.nlm.nih.gov/protein/WP_039005675.1|WP_039005675.1]] | |
| XopG | [[:bacteria:t3e:xopg|XopG1]] | | HopH (HopPtoH), RipAX2 | [[https://www.ncbi.nlm.nih.gov/protein/WP_011346758.1|WP_011346758.1]] | [[https://www.ebi.ac.uk/interpro/entry/pfam/PF14891/|Peptidase_M91 superfamily]]; HEXXH motif, typical of zinc metallopeptidases |
| XopG | [[:bacteria:t3e:xopg|XopG2]] | | HopH (HopPtoH), RipAX2 | [[https://www.ncbi.nlm.nih.gov/protein/WP_011038360.1|WP_011038360.1]] | [[https://www.ebi.ac.uk/interpro/entry/pfam/PF14891/|Peptidase_M91 superfamily]]; HEXXH motif, typical of zinc metallopeptidases |
| XopG | [[:bacteria:t3e:xopg|XopG3]] | | HopH (HopPtoH), RipAX1 | [[https://www.ncbi.nlm.nih.gov/protein/WP_084217840.1|WP_084217840.1]] | [[https://www.ebi.ac.uk/interpro/entry/pfam/PF14891/|Peptidase_M91 superfamily]]; HEXXH motif, typical of zinc metallopeptidases |
| XopH | [[:bacteria:t3e:xoph|XopH1]] | AvrBs1.1, AvrBs7 | HopAO1 (HopPtoD2), RipBL | [[https://www.ncbi.nlm.nih.gov/protein/WP_011345706.1|WP_011345706.1]] | [[https://www.ebi.ac.uk/interpro/entry/pfam/PF14566/|Protein tyrosine phosphatase-like phytase]]; [[https://www.ebi.ac.uk/interpro/entry/InterPro/IPR000387/|Tyrosine-specific protein phosphatase]] |
| XopH | [[:bacteria:t3e:xoph|XopH2]] | | HopAO1 (HopPtoD2), RipBL | [[https://www.ncbi.nlm.nih.gov/protein/WP_010377341.1|WP_010377341.1]] | [[https://www.ebi.ac.uk/interpro/entry/pfam/PF14566/|Protein tyrosine phosphatase-like phytase]]; [[https://www.ebi.ac.uk/interpro/entry/InterPro/IPR000387/|Tyrosine-specific protein phosphatase]] |
| XopI | [[:bacteria:t3e:xopi|XopI1]] | | | [[https://www.ncbi.nlm.nih.gov/protein/WP_011346406.1|WP_011346406.1]] | [[https://www.ebi.ac.uk/interpro/entry/InterPro/IPR001810/|F-box domain]] |
| XopI | [[:bacteria:t3e:xopi|XopI2]] | | | [[https://www.ncbi.nlm.nih.gov/protein/WP_010367684.1|WP_010367684.1]] | [[https://www.ebi.ac.uk/interpro/entry/InterPro/IPR001810/|F-box domain]] |
| XopJ | [[:bacteria:t3e:xopj1|XopJ1]] | | HopZ1, RipP1 | [[https://www.ncbi.nlm.nih.gov/protein/WP_011347382.1|WP_011347382.1]] | [[https://www.ebi.ac.uk/interpro/entry/InterPro/IPR005083/|Ser/Thr acetyltransferase]] |
| XopJ | [[:bacteria:t3e:xopj2|XopJ2]] | AvrBsT | HopZ1, RipP1 | [[https://www.ncbi.nlm.nih.gov/protein/WP_074052319.1|WP_074052319.1]] | [[https://www.ebi.ac.uk/interpro/entry/InterPro/IPR005083/|Ser/Thr acetyltransferase]] |
| XopJ | [[:bacteria:t3e:xopj3|XopJ3]] | AvrRxv | HopZ1, RipP1 | [[https://www.ncbi.nlm.nih.gov/protein/WP_011346137.1|WP_011346137.1]] | [[https://www.ebi.ac.uk/interpro/entry/InterPro/IPR005083/|Ser/Thr acetyltransferase]] |
| XopJ | [[:bacteria:t3e:xopj4|XopJ4]] | AvrXv4 | HopZ1, RipP1 (formerly PopP1) | [[https://www.ncbi.nlm.nih.gov/protein/WP_008572727.1|WP_008572727.1]] | [[https://www.ebi.ac.uk/interpro/entry/InterPro/IPR005083/|Ser/Thr acetyltransferase]] |
| XopJ | [[:bacteria:t3e:xopj5|XopJ5]] | AvrXccB | HopZ1, RipK, RipP1 | [[https://www.ncbi.nlm.nih.gov/protein/WP_228442257.1|WP_228442257.1]] | [[https://www.ebi.ac.uk/interpro/entry/InterPro/IPR005083/|Ser/Thr acetyltransferase]] |
| XopJ | [[:bacteria:t3e:xopj6|XopJ6]] | | RipP2 (formerly PopP2) | [[https://www.ncbi.nlm.nih.gov/protein/WP_196765268.1|WP_196765268.1]] | [[https://www.ebi.ac.uk/interpro/entry/InterPro/IPR005083/|Ser/Thr acetyltransferase]] |
| XopK | [[:bacteria:t3e:xopk|XopK]] | | | [[https://www.ncbi.nlm.nih.gov/protein/WP_027703763.1|WP_027703763.1]] | |
| XopL | [[:bacteria:t3e:xopl|XopL]] | | RipAC (formerly PopC) | [[https://www.ncbi.nlm.nih.gov/protein/WP_218498620.1|WP_218498620.1]] | [[https://www.ebi.ac.uk/interpro/entry/InterPro/IPR003591/|LRR motif]]; [[https://www.ebi.ac.uk/interpro/entry/InterPro/IPR001611/|LRR domain]] |
| XopM | [[:bacteria:t3e:xopm|XopM]] | | | [[https://www.ncbi.nlm.nih.gov/protein/WP_011346113.1|WP_011346113.1]] | |
| XopN | [[:bacteria:t3e:xopn|XopN]] | | HopAU1 | [[https://www.ncbi.nlm.nih.gov/protein/WP_011348010.1|WP_011348010.1]] | ARM/HEAT repeat |
| XopO | [[:bacteria:t3e:xopo|XopO]] | | HopK1 (HopPtoK, HolPtoAB) N-terminal domain, AvrRps4 | [[https://www.ncbi.nlm.nih.gov/protein/WP_011346566.1|WP_011346566.1]] | [[https://www.ebi.ac.uk/interpro/entry/cdd/CD21837/|AvrRps4 C-terminal region]] |
| XopP | [[:bacteria:t3e:xopp|XopP]] | | RipH3 (formerly Hlk) | [[https://www.ncbi.nlm.nih.gov/protein/WP_104613784.1|WP_104613784.1]] | |
| XopQ | [[:bacteria:t3e:xopq|XopQ]] | | HopQ1 (HolPtoQ), RipB | [[https://www.ncbi.nlm.nih.gov/protein/WP_011349176.1|WP_011349176.1]] | [[https://www.ebi.ac.uk/interpro/entry/InterPro/IPR001910/|Inosine/uridine-preferring nucleoside hydrolase]] |
| XopR | [[:bacteria:t3e:xopr|XopR]] | | | [[https://www.ncbi.nlm.nih.gov/protein/WP_011260681.1|WP_011260681.1]] | |
| XopS | [[:bacteria:t3e:xops|XopS]] | | | [[https://www.ncbi.nlm.nih.gov/protein/WP_039418869.1|WP_039418869.1]] | |
| XopT | [[:bacteria:t3e:xopt|XopT]] | | | [[https://www.ncbi.nlm.nih.gov/protein/WP_199285673.1|WP_199285673.1]] | [[https://www.ebi.ac.uk/interpro/entry/InterPro/IPR035915/|Plectin-repeat]] |
| XopU | [[:bacteria:t3e:xopu|XopU]] | | | [[https://www.ncbi.nlm.nih.gov/protein/WP_011408937.1|WP_011408937.1]] | |
| XopV | [[:bacteria:t3e:xopv|XopV]] | | RipAD | [[https://www.ncbi.nlm.nih.gov/protein/WP_011409498.1|WP_011409498.1]] | |
| XopW | [[:bacteria:t3e:xopw|XopW]] | | RS_T3E_Hyp14 | [[https://www.ncbi.nlm.nih.gov/protein/WP_228329674.1|WP_228329674.1]] | |
| XopX | [[:bacteria:t3e:xopx|XopX]] | | HopAE1 (HolPsyAE), RipBI | [[https://www.ncbi.nlm.nih.gov/protein/WP_011346212.1|WP_011346212.1]] | |
| XopY | [[:bacteria:t3e:xopy|XopY]] | | | [[https://www.ncbi.nlm.nih.gov/protein/WP_011408080.1|WP_011408080.1]] | |
| XopZ | [[:bacteria:t3e:xopz|XopZ1]] | | HopAS1 | [[https://www.ncbi.nlm.nih.gov/protein/WP_011259177.1|WP_011259177.1]] | |
| XopZ | [[:bacteria:t3e:xopz|XopZ2]] | | HopAS1 | [[http://www.ncbi.nlm.nih.gov/protein/WP_039421390.1|WP_039421390.1]] | |
| XopAA | [[:bacteria:t3e:xopaa|XopAA]] | Ecf | HopAE1 (HolPsyAE), weakly related to RipBI | [[https://www.ncbi.nlm.nih.gov/protein/WP_041855088.1|WP_041855088.1]] | Early chlorosis factor; Proteasome/cyclosome repeat |
| XopAB | [[:bacteria:t3e:xopab|XopAB]] | | weakly related to XopN | [[https://www.ncbi.nlm.nih.gov/protein/WP_011409110.1|WP_011409110.1]] | |
| XopAC | [[:bacteria:t3e:xopac|XopAC]] | AvrAC | RipAC (formerly PopC) | [[https://www.ncbi.nlm.nih.gov/protein/WP_011269629.1|WP_011269629.1]] | [[https://www.ebi.ac.uk/interpro/entry/InterPro/IPR003591/|LRR motif]]; [[https://www.ebi.ac.uk/interpro/entry/InterPro/IPR032675/|LRR domain]]; [[https://www.ebi.ac.uk/interpro/entry/InterPro/IPR003812/|Fido domain]]; Vascular hypersensitivity in //Arabidopsis// landrace Col-0 |
| XopAD | [[:bacteria:t3e:xopad|XopAD]] | | RipS3 | [[https://www.ncbi.nlm.nih.gov/protein/WP_011409710.1|WP_011409710.1]] | SKWP repeat protein; [[https://www.ebi.ac.uk/interpro/entry/InterPro/IPR011989/|Armadillo-like helical repeat]]; [[https://www.ebi.ac.uk/interpro/entry/InterPro/IPR016024/|Armadillo-type fold]]; [[https://www.ebi.ac.uk/interpro/entry/InterPro/IPR007685/|RelA/SpoT superfamily]] |
| XopAE | [[:bacteria:t3e:xopae|XopAE]] | HpaF/HpaG | RipAC (formerly PopC) | [[https://www.ncbi.nlm.nih.gov/protein/WP_011050288.1|WP_011050288.1]] | [[https://www.ebi.ac.uk/interpro/entry/InterPro/IPR003591/|LRR motif]]; [[https://www.ebi.ac.uk/interpro/entry/InterPro/IPR032675/|LRR domain]] |
| XopAF | [[:bacteria:t3e:xopaf|XopAF1]] | AvrXv3 | HopAF1 (HopPtoJ), RipBD | [[https://www.ncbi.nlm.nih.gov/protein/WP_008577605.1|WP_008577605.1]] | |
| XopAF | [[:bacteria:t3e:xopaf|XopAF2]] | | HopAF1 (HopPtoJ), RipBD | [[https://www.ncbi.nlm.nih.gov/protein/WP_227479740.1|WP_227479740.1]] | |
| XopAG | [[:bacteria:t3e:xopag|XopAG1]] | AvrGf1 | HopG1 (HopPtoG), HolPtoW, RipO1 | [[https://www.ncbi.nlm.nih.gov/protein/WP_272820829.1|WP_272820829.1]] | |
| XopAG | [[:bacteria:t3e:xopag|XopAG2]] | AvrGf2 | HopG1 (HopPtoG), HolPtoW, RipO1 | [[https://www.ncbi.nlm.nih.gov/protein/WP_007970248.1|WP_007970248.1]] | |
| XopAH | [[:bacteria:t3e:xopah|XopAH]] | AvrXccC | AvrB/AvrC (AvrPphC) | [[https://www.ncbi.nlm.nih.gov/protein/WP_011037263.1|WP_011037263.1]] | [[https://www.ebi.ac.uk/interpro/entry/InterPro/IPR008798/|AvrB/AvrC-family avirulence protein]] |
| XopAI | [[:bacteria:t3e:xopai|XopAI]] | | HopO1 (HopPtoO, HopPtoS), HopAI1 (HolPtoAI) | [[https://www.ncbi.nlm.nih.gov/protein/WP_011052119.1|WP_011052119.1]] | [[https://www.ebi.ac.uk/interpro/entry/InterPro/IPR000768/|NAD:arginine ADP-ribosyltransferase]] |
| XopAJ | [[:bacteria:t3e:xopaj|XopAJ]] | AvrRxo1 | | [[https://www.ncbi.nlm.nih.gov/protein/WP_014504815.1|WP_014504815.1]] | [[https://www.ebi.ac.uk/interpro/entry/InterPro/IPR027417/|P-loop containing nucleoside triphosphate hydrolase]] |
| XopAK | [[:bacteria:t3e:xopak|XopAK]] | | HopK1 (HopPtoK, HolPtoAB) C-terminal domain, RipBQ | [[https://www.ncbi.nlm.nih.gov/protein/WP_269466020.1|WP_269466020.1]] | |
| XopAL | [[:bacteria:t3e:xopal1|XopAL1]] | | Eop3, weakly similar to HopX, RipE2 | [[https://www.ncbi.nlm.nih.gov/protein/WP_274360846.1|WP_274360846.1]] | |
| XopAL | [[:bacteria:t3e:xopal2|XopAL2]] | | Eop3, RS_T3E_Hyp14 | [[https://www.ncbi.nlm.nih.gov/protein/WP_012437264.1|WP_012437264.1]] | |
| XopAM | [[:bacteria:t3e:xopam|XopAM]] | | HopR1, RipR | [[https://www.ncbi.nlm.nih.gov/protein/WP_012438997.1|WP_012438997.1]] | AvrE-family effector |
| XopAN | [[:bacteria:t3e:xopan|XopAN]] | | | | Replaced by XopAV |
| XopAO | [[:bacteria:t3e:xopao|XopAO]] | | AvrRpm1, RipBA | [[https://www.ncbi.nlm.nih.gov/protein/WP_162267513.1|WP_162267513.1]] | |
| XopAP | [[:bacteria:t3e:xopap|XopAP]] | | RipAL | [[https://www.ncbi.nlm.nih.gov/protein/WP_236504155.1|WP_236504155.1]] | [[https://www.ebi.ac.uk/interpro/entry/InterPro/IPR029058/|α/β hydrolase fold]]; [[https://www.ebi.ac.uk/interpro/entry/pfam/PF01764/|Class-3 lipase]] |
| XopAQ | [[:bacteria:t3e:xopaq|XopAQ]] | | RipAH/RipAG | [[https://www.ncbi.nlm.nih.gov/protein/WP_233366621.1|WP_233366621.1]] | |
| XopAR | [[:bacteria:t3e:xopar|XopAR]] | | RipBE | [[https://www.ncbi.nlm.nih.gov/protein/APO95022.1|(APO95022.1)]] | |
| XopAS | [[:bacteria:t3e:xopas|XopAS]] | | HopAS1 | [[https://www.ncbi.nlm.nih.gov/protein/WP_229015407.1|WP_229015407.1]] | |
| XopAT | [[:bacteria:t3e:xopat|XopAT]] | | | [[https://www.ncbi.nlm.nih.gov/protein/AEL06363.1|(AEL06363.1)]] | |
| XopAU | [[:bacteria:t3e:xopau|XopAU]] | | | [[https://www.ncbi.nlm.nih.gov/protein/WP_041855031.1|WP_041855031.1]] | Serine/threonine kinase; [[https://www.ebi.ac.uk/interpro/entry/InterPro/IPR000719/|Protein kinase domain]]; [[https://www.ebi.ac.uk/interpro/entry/InterPro/IPR017441/|ATP-binding site]] |
| XopAV | [[:bacteria:t3e:xopav|XopAV1]] | | | [[https://www.ncbi.nlm.nih.gov/protein/WP_065628638.1|WP_065628638.1]] | |
| XopAV | [[:bacteria:t3e:xopav|XopAV2]] | | | [[https://www.ncbi.nlm.nih.gov/protein/WP_011269951.1|WP_011269951.1]] | |
| XopAW | [[:bacteria:t3e:xopaw|XopAW]] | | | [[https://www.ncbi.nlm.nih.gov/protein/WP_011348129.1|WP_011348129.1]] | Calcium-binding protein; [[https://www.ebi.ac.uk/interpro/entry/InterPro/IPR002048/|EF-hand domain]]; [[https://www.ebi.ac.uk/interpro/entry/InterPro/IPR018247/|Calcium-binding site]] |
| XopAX | [[:bacteria:t3e:xopax|XopAX]] | | | [[https://www.ncbi.nlm.nih.gov/protein/WP_041854960.1|WP_041854960.1]] | |
| XopAY | [[:bacteria:t3e:xopay|XopAY]] | | | | Replaced by XopAV |
| XopAZ | [[:bacteria:t3e:xopaz|XopAZ]] | | | [[https://www.ncbi.nlm.nih.gov/protein/WP_104549896.1|WP_104549896.1]] | SlpA superfamily; [[https://www.ebi.ac.uk/interpro/entry/InterPro/IPR001179/|FKBP-type peptidyl-prolyl cis-trans isomerase]] |
| XopBA | [[:bacteria:t3e:xopba|XopBA]] | | HopW1, RipBP | [[https://www.ncbi.nlm.nih.gov/protein/WP_227478587.1|WP_227478587.1]] | |
| XopBB | [[:bacteria:t3e:xopbb|XopBB]] | | HopF2 (AvrPphF) | [[https://www.ncbi.nlm.nih.gov/protein/WP_251761698.1|WP_251761698.1]] | |
| XopBC | | | | | = XopAV class |
| XopBD | | | | | = XopAT class |
| XopBE | | | | | = XopC class |
| XopBF | | | | | = XopAV class |
| XopBG | [[:bacteria:t3e:xopbg|XopBG]] | | | [[https://www.ncbi.nlm.nih.gov/protein/WP_145953988.1|WP_145953988.1]] | |
| XopBH | | | | | Reserved. Please contact Ralf Koebnik. |
===== Avirulence or type III-secreted proteins that are not considered effectors in a narrow sense =====
^Name ^Synonyms ^Related proteins ^RefSeq ID (GenBank ID) ^Function / Features ^Reference |
|AvrXccA1 |AvrXca | |[[https://www.ncbi.nlm.nih.gov/protein/WP_011039290.1|WP_011039290.1]] |Avirulence protein, perhaps not a T3E |Parker //et al.//, 1993 |
|AvrXccA2 | | |[[https://www.ncbi.nlm.nih.gov/protein/WP_274318562.1|WP_274318562.1]] |Avirulence protein, perhaps not a T3E | |
|HpaA | | |[[https://www.ncbi.nlm.nih.gov/protein/WP_011346100.1|WP_011346100.1]] |Type III secretion control protein, perhaps not a T3E |Lorenz //et al.//, 2008 |
|HpaT | | |[[https://www.ncbi.nlm.nih.gov/protein/WP_058196718.1|WP_058196718.1]] |Putative translocon protein, not a T3E |Pesce //et al.//, 2017 |
|HrpB2 | | |[[https://www.ncbi.nlm.nih.gov/protein/WP_008575450.1|WP_008575450.1]] |Putative inner rod protein, not a T3E |Rossier //et al.//, 2000; Scheibner //et al.//, 2016 |
|HrpE |HrpE1 | |[[https://www.ncbi.nlm.nih.gov/protein/WP_011346098.1|WP_011346098.1]] |Major subunit of the Hrp pilus |Weber //et al.//, 2005; Weber & Koebnik, 2005; Weber & Koebnik, 2006; Gottig //et al.//, 2018 |
|HrpF | |RipF (formerly PopF) |[[https://www.ncbi.nlm.nih.gov/protein/WP_011346092.1|WP_011346092.1]] |Putative translocon protein, not a T3E |Huguet & Bonas, 1997; Meyer //et al.//, 2006 |
|HrpW | |RipW (formerly PopW) |[[https://www.ncbi.nlm.nih.gov/protein/WP_005926112.1|WP_005926112.1]] |[[https://www.ebi.ac.uk/interpro/entry/pfam/PF03211|Pectate lyase]], perhaps not a T3E |Charkowski //et al.//, 1998; Li //et al.//, 2010 |
|XopA |Hpa1/HpaG | |[[https://www.ncbi.nlm.nih.gov/protein/WP_011346111.1|WP_011346111.1]] |Harpin, perhaps not a T3E |Zhu //et al.//, 2000; Kim //et al.//, 2004; Sgro //et al.//, 2012; Wang //et al.//, 2018 |
===== References =====
Charkowski AO, Alfano JR, Preston G, Yuan J, He SY, Collmer A (1998). The //Pseudomonas syringae// pv. //tomato// HrpW protein has domains similar to harpins and pectate lyases and can elicit the plant hypersensitive response and bind to pectate. J. Bacteriol. 180: 5211-5217. DOI: [[https://doi.org/10.1128/JB.180.19.5211-5217.1998|10.1128/JB.180.19.5211-5217.1998]]
Gottig N, Vranych CV, Sgro GG, Piazza A, Ottado J (2018). HrpE, the major component of the //Xanthomonas// type three protein secretion pilus, elicits plant immunity responses. Sci. Rep. 8: 9842. DOI: [[https://doi.org/10.1038/s41598-018-27869-1|10.1038/s41598-018-27869-1]]
Huguet E, Bonas U (1997). HrpF of //Xanthomonas campestris// pv. //vesicatoria// encodes an 87-kDa protein with homology to NoIX of //Rhizobium fredii//. Mol. Plant Microbe Interact. 10: 488-498. DOI: [[https://doi.org/10.1094/MPMI.1997.10.4.488|10.1094/MPMI.1997.10.4.488]]
Kim JG, Jeon E, Oh J, Moon JS, Hwang I (2004). Mutational analysis of //Xanthomonas// harpin HpaG identifies a key functional region that elicits the hypersensitive response in nonhost plants. J. Bacteriol. 186: 6239-6247. DOI: [[https://doi.org/10.1128/JB.186.18.6239-6247.2004|10.1128/JB.186.18.6239-6247.2004]]
Li JG, Liu HX, Cao J, Chen LF, Gu C, Allen C, Guo JH (2010). PopW of //Ralstonia solanacearum//, a new two-domain harpin targeting the plant cell wall. Mol. Plant Pathol. 11: 371-381. DOI: [[https://doi.org/10.1111/j.1364-3703.2010.00610.x|10.1111/j.1364-3703.2010.00610.x]]
Lindeberg M, Stavrinides J, Chang JH, Alfano JR, Collmer A, Dangl JL, Greenberg JT, Mansfield JW, Guttman DS (2005). Proposed guidelines for a unified nomenclature and phylogenetic analysis of type III Hop effector proteins in the plant pathogen// Pseudomonas syringae//. Mol. Plant Microbe Interact. 18: 275-282. DOI: [[https://doi.org/10.1094/MPMI-18-0275|10.1094/MPMI-18-0275]]
Lorenz C, Kirchner O, Egler M, Stuttmann J, Bonas U, Büttner D (2008). HpaA from //Xanthomonas// is a regulator of type III secretion. Mol. Microbiol. 69: 344-360. DOI: [[https://doi.org/10.1111/j.1365-2958.2008.06280.x|10.1111/j.1365-2958.2008.06280.x]]
Meyer D, Cunnac S, Guéneron M, Declercq C, Van Gijsegem F, Lauber E, Boucher C, Arlat M (2006). PopF1 and PopF2, two proteins secreted by the type III protein secretion system of //Ralstonia solanacearum//, are translocators belonging to the HrpF/NopX family. J. Bacteriol. 188: 4903-4917. DOI: [[https://doi.org/10.1128/JB.00180-06|10.1128/JB.00180-06]]
Parker JE, Barber CE, Fan MJ, Daniels MJ (1993). Interaction of //Xanthomonas campestris// with //Arabidopsis thaliana//: characterization of a gene from //X. c.// pv. //raphani// that confers avirulence to most //A. thaliana// accessions. Mol. Plant Microbe Interact. 6: 216-224. DOI: [[https://doi.org/10.1094/mpmi-6-216|10.1094/mpmi-6-216]]
Peeters N, Carrère S, Anisimova M, Plener L, Cazalé AC, Genin S (2013). Repertoire, unified nomenclature and evolution of the Type III effector gene set in the //Ralstonia solanacearum// species complex. BMC Genomics 14: 859. DOI: [[https://doi.org/10.1186/1471-2164-14-859|10.1186/1471-2164-14-859]]
Pesce C, Jacobs JM, Berthelot E, Perret M, Vancheva T, Bragard C, Koebnik R (2017). Comparative genomics identifies a novel conserved protein, HpaT, in proteobacterial type III secretion systems that do not possess the putative translocon protein HrpF. Front. Microbiol. 8: 1177. DOI: [[https://doi.org/10.3389/fmicb.2017.01177|10.3389/fmicb.2017.01177]]
Rossier O, Van den Ackerveken G, Bonas U (2000). HrpB2 and HrpF from //Xanthomonas// are type III-secreted proteins and essential for pathogenicity and recognition by the host plant. Mol. Microbiol. 38: 828-838. DOI: [[https://doi.org/10.1046/j.1365-2958.2000.02173.x|10.1046/j.1365-2958.2000.02173.x]]
Sabbagh CRR, Carrere S, Lonjon F, Vailleau F, Macho AP, Genin S, Peeters N (2019). Pangenomic type III effector database of the plant pathogenic //Ralstonia// spp. PeerJ 7: e7346. DOI: [[https://doi.org/10.7717/peerj.7346|10.7717/peerj.7346]]
Scheibner F, Schulz S, Hausner J, Marillonnet S, Büttner D (2016). Type III-dependent translocation of HrpB2 by a nonpathogenic //hpaABC// mutant of the plant-pathogenic bacterium //Xanthomonas campestris// pv. //vesicatoria//. Appl. Environ. Microbiol. 82: 3331-3347. DOI: [[https://doi.org/10.1128/AEM.00537-16|10.1128/AEM.00537-16]]
Sgro GG, Ficarra FA, Dunger G, Scarpeci TE, Valle EM, Cortadi A, Orellano EG, Gottig N, Ottado J (2012). Contribution of a harpin protein from //Xanthomonas axonopodis// pv. //citri// to pathogen virulence. Mol. Plant Pathol. 13: 1047-1059. DOI: [[https://doi.org/10.1111/j.1364-3703.2012.00814.x|10.1111/j.1364-3703.2012.00814.x]]
Wang X, Zhang L, Ji H, Mo X, Li P, Wang J, Dong H (2018). Hpa1 is a type III translocator in //Xanthomonas oryzae// pv. //oryzae//. BMC Microbiol. 18: 105. DOI: [[https://doi.org/10.1186/s12866-018-1251-3|10.1186/s12866-018-1251-3]]
Weber E, Koebnik R (2005). Domain structure of HrpE, the Hrp pilus subunit of //Xanthomonas campestris// pv. //vesicatoria//. J. Bacteriol. 187: 6175-6186. DOI: [[https://doi.org/10.1128/JB.187.17.6175-6186.2005|10.1128/JB.187.17.6175-6186.2005]]
Weber E, Koebnik R (2006). Positive selection of the Hrp pilin HrpE of the plant pathogen //Xanthomonas//. J. Bacteriol. 188: 1405-1410. DOI: [[https://doi.org/10.1128/JB.188.4.1405-1410.2006|10.1128/JB.188.4.1405-1410.2006]]
Weber E, Ojanen-Reuhs T, Huguet E, Hause G, Romantschuk M, Korhonen TK, Bonas U, Koebnik R (2005). The type III-dependent Hrp pilus is required for productive interaction of //Xanthomonas campestris// pv. //vesicatoria// with pepper host plants. J. Bacteriol. 187: 2458-2468. DOI: [[https://doi.org/10.1128/JB.187.7.2458-2468.2005|10.1128/JB.187.7.2458-2468.2005]]
Zhu W, MaGbanua MM, White FF (2000). Identification of two novel hrp-associated genes in the //hrp// gene cluster of //Xanthomonas oryzae// pv. //oryzae//. J. Bacteriol. 182: 1844-1853. DOI: [[https://doi.org/10.1128/JB.182.7.1844-1853.2000|10.1128/JB.182.7.1844-1853.2000]]